14,568 research outputs found
Principal manifolds and graphs in practice: from molecular biology to dynamical systems
We present several applications of non-linear data modeling, using principal
manifolds and principal graphs constructed using the metaphor of elasticity
(elastic principal graph approach). These approaches are generalizations of the
Kohonen's self-organizing maps, a class of artificial neural networks. On
several examples we show advantages of using non-linear objects for data
approximation in comparison to the linear ones. We propose four numerical
criteria for comparing linear and non-linear mappings of datasets into the
spaces of lower dimension. The examples are taken from comparative political
science, from analysis of high-throughput data in molecular biology, from
analysis of dynamical systems.Comment: 12 pages, 9 figure
Data complexity measured by principal graphs
How to measure the complexity of a finite set of vectors embedded in a
multidimensional space? This is a non-trivial question which can be approached
in many different ways. Here we suggest a set of data complexity measures using
universal approximators, principal cubic complexes. Principal cubic complexes
generalise the notion of principal manifolds for datasets with non-trivial
topologies. The type of the principal cubic complex is determined by its
dimension and a grammar of elementary graph transformations. The simplest
grammar produces principal trees.
We introduce three natural types of data complexity: 1) geometric (deviation
of the data's approximator from some "idealized" configuration, such as
deviation from harmonicity); 2) structural (how many elements of a principal
graph are needed to approximate the data), and 3) construction complexity (how
many applications of elementary graph transformations are needed to construct
the principal object starting from the simplest one).
We compute these measures for several simulated and real-life data
distributions and show them in the "accuracy-complexity" plots, helping to
optimize the accuracy/complexity ratio. We discuss various issues connected
with measuring data complexity. Software for computing data complexity measures
from principal cubic complexes is provided as well.Comment: Computers and Mathematics with Applications, in pres
Givental graphs and inversion symmetry
Inversion symmetry is a very non-trivial discrete symmetry of Frobenius
manifolds. It was obtained by Dubrovin from one of the elementary Schlesinger
transformations of a special ODE associated to a Frobenius manifold. In this
paper, we review the Givental group action on Frobenius manifolds in terms of
Feynman graphs and obtain an interpretation of the inversion symmetry in terms
of the action of the Givental group. We also consider the implication of this
interpretation of the inversion symmetry for the Schlesinger transformations
and for the Hamiltonians of the associated principle hierarchy.Comment: 26 pages; revised according to the referees' remark
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