Geographical queries reformulation using a parallel association rules generator to build spatial taxonomies

Geographical queries need a special process of reformulation by information retrieval systems (IRS) due to their specificities and hierarchical structure. This fact is ignored by most of web search engines. In this paper, we propose an automatic approach for building a spatial taxonomy, that models’ the notion of adjacency that will be used in the reformulation of the spatial part of a geographical query. This approach exploits the documents that are in top of the retrieved list when submitting a spatial entity, which is composed of a spatial relation and a noun of a city. Then, a transactional database is constructed, considering each document extracted as a transaction that contains the nouns of the cities sharing the country of the submitted query’s city. The algorithm frequent pattern growth (FP-growth) is applied to this database in his parallel version (parallel FP-growth: PFP) in order to generate association rules, that will form the country’s taxonomy in a Big Data context. Experiments has been conducted on Spark and their results show that query reformulation using the taxonomy constructed based on our proposed approach improves the precision and the effectiveness of the IRS

Maximizing Insight from Modern Economic Analysis

The last decade has seen a growing trend of economists exploring how to extract different economic insight from "big data" sources such as the Web. As economists move towards this model of analysis, their traditional workflow starts to become infeasible. The amount of noisy data from which to draw insights presents data management challenges for economists and limits their ability to discover meaningful information. This leads to economists needing to invest a great deal of energy in training to be data scientists (a catch-all role that has grown to describe the usage of statistics, data mining, and data management in the big data age), with little time being spent on applying their domain knowledge to the problem at hand. We envision an ideal workflow that generates accurate and reliable results, where results are generated in near-interactive time, and systems handle the "heavy lifting" required for working with big data. This dissertation presents several systems and methodologies that bring economists closer to this ideal workflow, helping them address many of the challenges faced in transitioning to working with big data sources like the Web. To help users generate accurate and reliable results, we present approaches to identifying relevant predictors in nowcasting applications, as well as methods for identifying potentially invalid nowcasting models and their inputs. We show how a streamlined workflow, combined with pruning and shared computation, can help handle the heavy lifting of big data analysis, allowing users to generate results in near-interactive time. We also present a novel user model and architecture for helping users avoid undesirable bias when doing data preparation: users interactively define constraints for transformation code and the data that the code produces, and an explain-and-repair system satisfies these constraints as best it can, also providing an explanation for any problems along the way. These systems combined represent a unified effort to streamline the transition for economists to this new big data workflow.PHDComputer Science & EngineeringUniversity of Michigan, Horace H. Rackham School of Graduate Studieshttps://deepblue.lib.umich.edu/bitstream/2027.42/144007/1/dol_1.pd

Knowledge-based and data-driven approaches for geographical information access

Geographical Information Access (GeoIA) can be defined as a way of retrieving information from textual collections that includes the automatic analysis and interpretation of the geographical constraints and terms present in queries and documents. This PhD thesis presents, describes and evaluates several heterogeneous approaches for the following three GeoIA tasks: Geographical Information Retrieval (GIR), Geographical Question Answering (GeoQA), and Textual Georeferencing (TG). The GIR task deals with user queries that search over documents (e.g. ¿vineyards in California?) and the GeoQA task treats questions that retrieve answers (e.g. ¿What is the capital of France?). On the other hand, TG is the task of associate one or more georeferences (such as polygons or coordinates in a geodetic reference system) to electronic documents. Current state-of-the-art AI algorithms are not yet fully understanding the semantic meaning and the geographical constraints and terms present in queries and document collections. This thesis attempts to improve the effectiveness results of GeoIA tasks by: 1) improving the detection, understanding, and use of a part of the geographical and the thematic content of queries and documents with Toponym Recognition, Toponym Disambiguation and Natural Language Processing (NLP) techniques, and 2) combining Geographical Knowledge-Based Heuristics based on common sense with Data-Driven IR algorithms. The main contributions of this thesis to the state-of-the-art of GeoIA tasks are: 1) The presentation of 10 novel approaches for GeoIA tasks: 3 approaches for GIR, 3 for GeoQA, and 4 for Textual Georeferencing (TG). 2) The evaluation of these novel approaches in these contexts: within official evaluation benchmarks, after evaluation benchmarks with the test collections, and with other specific datasets. Most of these algorithms have been evaluated in international evaluations and some of them achieved top-ranked state-of-the-art results, including top-performing results in GIR (GeoCLEF 2007) and TG (MediaEval 2014) benchmarks. 3) The experiments reported in this PhD thesis show that the approaches can combine effectively Geographical Knowledge and NLP with Data-Driven techniques to improve the efectiveness measures of the three Geographical Information Access tasks investigated. 4) TALPGeoIR: a novel GIR approach that combines Geographical Knowledge ReRanking (GeoKR), NLP and Relevance Feedback (RF) that achieved state-of-the-art results in official GeoCLEF benchmarks (Ferrés and Rodríguez, 2008; Mandl et al., 2008) and posterior experiments (Ferrés and Rodríguez, 2015a). This approach has been evaluated with the full GeoCLEF corpus (100 topics) and showed that GeoKR, NLP, and RF techniques evaluated separately or in combination improve the results in MAP and R-Precision effectiveness measures of the state-of-the-art IR algorithms TF-IDF, BM25 and InL2 and show statistical significance in most of the experiments. 5) GeoTALP-QA: a scope-based GeoQA approach for Spanish and English and its evaluation with a set of questions of the Spanish geography (Ferrés and Rodríguez, 2006). 6) Four state-of-the-art Textual Georeferencing approaches for informal and formal documents that achieved state-of-the-art results in evaluation benchmarks (Ferrés and Rodríguez, 2014) and posterior experiments (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).L'Accés a la Informació Geogràfica (GeoAI) pot ser definit com una forma de recuperar informació de col·lecions textuals que inclou l'anàlisi automàtic i la interpretació dels termes i restriccions geogràfiques que apareixen en consultes i documents. Aquesta tesi doctoral presenta, descriu i avalua varies aproximacions heterogènies a les seguents tasques de GeoAI: Recuperació de la Informació Geogràfica (RIG), Cerca de la Resposta Geogràfica (GeoCR), i Georeferenciament Textual (GT). La tasca de RIG tracta amb consultes d'usuari que cerquen documents (e.g. ¿vinyes a California?) i la tasca GeoCR tracta de recuperar respostes concretes a preguntes (e.g. ¿Quina és la capital de França?). D'altra banda, GT es la tasca de relacionar una o més referències geogràfiques (com polígons o coordenades en un sistema de referència geodètic) a documents electrònics. Els algoritmes de l'estat de l'art actual en Intel·ligència Artificial encara no comprenen completament el significat semàntic i els termes i les restriccions geogràfiques presents en consultes i col·leccions de documents. Aquesta tesi intenta millorar els resultats en efectivitat de les tasques de GeoAI de la seguent manera: 1) millorant la detecció, comprensió, i la utilització d'una part del contingut geogràfic i temàtic de les consultes i documents amb tècniques de reconeixement de topònims, desambiguació de topònims, i Processament del Llenguatge Natural (PLN), i 2) combinant heurístics basats en Coneixement Geogràfic i en el sentit comú humà amb algoritmes de Recuperació de la Informació basats en dades. Les principals contribucions d'aquesta tesi a l'estat de l'art de les tasques de GeoAI són: 1) La presentació de 10 noves aproximacions a les tasques de GeoAI: 3 aproximacions per RIG, 3 per GeoCR, i 4 per Georeferenciament Textual (GT). 2) L'avaluació d'aquestes noves aproximacions en aquests contexts: en el marc d'avaluacions comparatives internacionals, posteriorment a avaluacions comparatives internacionals amb les col·lections de test, i amb altres conjunts de dades específics. La majoria d'aquests algoritmes han estat avaluats en avaluacions comparatives internacionals i alguns d'ells aconseguiren alguns dels millors resultats en l'estat de l'art, com per exemple els resultats en comparatives de RIG (GeoCLEF 2007) i GT (MediaEval 2014). 3) Els experiments descrits en aquesta tesi mostren que les aproximacions poden combinar coneixement geogràfic i PLN amb tècniques basades en dades per millorar les mesures d'efectivitat en les tres tasques de l'Accés a la Informació Geogràfica investigades. 4) TALPGeoIR: una nova aproximació a la RIG que combina Re-Ranking amb Coneixement Geogràfic (GeoKR), PLN i Retroalimentació de Rellevancia (RR) que aconseguí resultats en l'estat de l'art en comparatives oficials GeoCLEF (Ferrés and Rodríguez, 2008; Mandl et al., 2008) i en experiments posteriors (Ferrés and Rodríguez, 2015a). Aquesta aproximació ha estat avaluada amb el conjunt complert del corpus GeoCLEF (100 topics) i ha mostrat que les tècniques GeoKR, PLN i RR avaluades separadament o en combinació milloren els resultats en les mesures efectivitat MAP i R-Precision dels algoritmes de l'estat de l'art en Recuperació de la Infomació TF-IDF, BM25 i InL2 i a més mostren significació estadística en la majoria dels experiments. 5) GeoTALP-QA: una aproximació basada en l'àmbit geogràfic per espanyol i anglès i la seva avaluació amb un conjunt de preguntes de la geografía espanyola (Ferrés and Rodríguez, 2006). 6) Quatre aproximacions per al georeferenciament de documents formals i informals que obtingueren resultats en l'estat de l'art en avaluacions comparatives (Ferrés and Rodríguez, 2014) i en experiments posteriors (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b)

Knowledge-based and data-driven approaches for geographical information access

Geographical Information Access (GeoIA) can be defined as a way of retrieving information from textual collections that includes the automatic analysis and interpretation of the geographical constraints and terms present in queries and documents. This PhD thesis presents, describes and evaluates several heterogeneous approaches for the following three GeoIA tasks: Geographical Information Retrieval (GIR), Geographical Question Answering (GeoQA), and Textual Georeferencing (TG). The GIR task deals with user queries that search over documents (e.g. ¿vineyards in California?) and the GeoQA task treats questions that retrieve answers (e.g. ¿What is the capital of France?). On the other hand, TG is the task of associate one or more georeferences (such as polygons or coordinates in a geodetic reference system) to electronic documents. Current state-of-the-art AI algorithms are not yet fully understanding the semantic meaning and the geographical constraints and terms present in queries and document collections. This thesis attempts to improve the effectiveness results of GeoIA tasks by: 1) improving the detection, understanding, and use of a part of the geographical and the thematic content of queries and documents with Toponym Recognition, Toponym Disambiguation and Natural Language Processing (NLP) techniques, and 2) combining Geographical Knowledge-Based Heuristics based on common sense with Data-Driven IR algorithms. The main contributions of this thesis to the state-of-the-art of GeoIA tasks are: 1) The presentation of 10 novel approaches for GeoIA tasks: 3 approaches for GIR, 3 for GeoQA, and 4 for Textual Georeferencing (TG). 2) The evaluation of these novel approaches in these contexts: within official evaluation benchmarks, after evaluation benchmarks with the test collections, and with other specific datasets. Most of these algorithms have been evaluated in international evaluations and some of them achieved top-ranked state-of-the-art results, including top-performing results in GIR (GeoCLEF 2007) and TG (MediaEval 2014) benchmarks. 3) The experiments reported in this PhD thesis show that the approaches can combine effectively Geographical Knowledge and NLP with Data-Driven techniques to improve the efectiveness measures of the three Geographical Information Access tasks investigated. 4) TALPGeoIR: a novel GIR approach that combines Geographical Knowledge ReRanking (GeoKR), NLP and Relevance Feedback (RF) that achieved state-of-the-art results in official GeoCLEF benchmarks (Ferrés and Rodríguez, 2008; Mandl et al., 2008) and posterior experiments (Ferrés and Rodríguez, 2015a). This approach has been evaluated with the full GeoCLEF corpus (100 topics) and showed that GeoKR, NLP, and RF techniques evaluated separately or in combination improve the results in MAP and R-Precision effectiveness measures of the state-of-the-art IR algorithms TF-IDF, BM25 and InL2 and show statistical significance in most of the experiments. 5) GeoTALP-QA: a scope-based GeoQA approach for Spanish and English and its evaluation with a set of questions of the Spanish geography (Ferrés and Rodríguez, 2006). 6) Four state-of-the-art Textual Georeferencing approaches for informal and formal documents that achieved state-of-the-art results in evaluation benchmarks (Ferrés and Rodríguez, 2014) and posterior experiments (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).L'Accés a la Informació Geogràfica (GeoAI) pot ser definit com una forma de recuperar informació de col·lecions textuals que inclou l'anàlisi automàtic i la interpretació dels termes i restriccions geogràfiques que apareixen en consultes i documents. Aquesta tesi doctoral presenta, descriu i avalua varies aproximacions heterogènies a les seguents tasques de GeoAI: Recuperació de la Informació Geogràfica (RIG), Cerca de la Resposta Geogràfica (GeoCR), i Georeferenciament Textual (GT). La tasca de RIG tracta amb consultes d'usuari que cerquen documents (e.g. ¿vinyes a California?) i la tasca GeoCR tracta de recuperar respostes concretes a preguntes (e.g. ¿Quina és la capital de França?). D'altra banda, GT es la tasca de relacionar una o més referències geogràfiques (com polígons o coordenades en un sistema de referència geodètic) a documents electrònics. Els algoritmes de l'estat de l'art actual en Intel·ligència Artificial encara no comprenen completament el significat semàntic i els termes i les restriccions geogràfiques presents en consultes i col·leccions de documents. Aquesta tesi intenta millorar els resultats en efectivitat de les tasques de GeoAI de la seguent manera: 1) millorant la detecció, comprensió, i la utilització d'una part del contingut geogràfic i temàtic de les consultes i documents amb tècniques de reconeixement de topònims, desambiguació de topònims, i Processament del Llenguatge Natural (PLN), i 2) combinant heurístics basats en Coneixement Geogràfic i en el sentit comú humà amb algoritmes de Recuperació de la Informació basats en dades. Les principals contribucions d'aquesta tesi a l'estat de l'art de les tasques de GeoAI són: 1) La presentació de 10 noves aproximacions a les tasques de GeoAI: 3 aproximacions per RIG, 3 per GeoCR, i 4 per Georeferenciament Textual (GT). 2) L'avaluació d'aquestes noves aproximacions en aquests contexts: en el marc d'avaluacions comparatives internacionals, posteriorment a avaluacions comparatives internacionals amb les col·lections de test, i amb altres conjunts de dades específics. La majoria d'aquests algoritmes han estat avaluats en avaluacions comparatives internacionals i alguns d'ells aconseguiren alguns dels millors resultats en l'estat de l'art, com per exemple els resultats en comparatives de RIG (GeoCLEF 2007) i GT (MediaEval 2014). 3) Els experiments descrits en aquesta tesi mostren que les aproximacions poden combinar coneixement geogràfic i PLN amb tècniques basades en dades per millorar les mesures d'efectivitat en les tres tasques de l'Accés a la Informació Geogràfica investigades. 4) TALPGeoIR: una nova aproximació a la RIG que combina Re-Ranking amb Coneixement Geogràfic (GeoKR), PLN i Retroalimentació de Rellevancia (RR) que aconseguí resultats en l'estat de l'art en comparatives oficials GeoCLEF (Ferrés and Rodríguez, 2008; Mandl et al., 2008) i en experiments posteriors (Ferrés and Rodríguez, 2015a). Aquesta aproximació ha estat avaluada amb el conjunt complert del corpus GeoCLEF (100 topics) i ha mostrat que les tècniques GeoKR, PLN i RR avaluades separadament o en combinació milloren els resultats en les mesures efectivitat MAP i R-Precision dels algoritmes de l'estat de l'art en Recuperació de la Infomació TF-IDF, BM25 i InL2 i a més mostren significació estadística en la majoria dels experiments. 5) GeoTALP-QA: una aproximació basada en l'àmbit geogràfic per espanyol i anglès i la seva avaluació amb un conjunt de preguntes de la geografía espanyola (Ferrés and Rodríguez, 2006). 6) Quatre aproximacions per al georeferenciament de documents formals i informals que obtingueren resultats en l'estat de l'art en avaluacions comparatives (Ferrés and Rodríguez, 2014) i en experiments posteriors (Ferrés and Rodríguez, 2011; Ferrés and Rodríguez, 2015b).Postprint (published version

Integrating Medical Ontology and Pseudo Relevance Feedback For Medical Document Retrieval

The purpose of this thesis is to undertake and improve the accuracy of locating the relevant documents from a large amount of Electronic Medical Data (EMD). The unique goal of this research is to propose a new idea for using medical ontology to find an easy and more reliable approach for patients to have a better understanding of their diseases and also help doctors to find and further improve the possible methods of diagnosis and treatments. The empirical studies were based on the dataset provided by CLEF focused on health care data. In this research, I have used Information Retrieval to find and obtain relevant information within the large amount of data sets provided by CLEF. I then used ranking functionality on the Terrier platform to calculate and evaluate the matching documents in the collection of data sets. BM25 was used as the base normalization method to retrieve the results and Pseudo Relevance Feedback weighting model to retrieve the information regarding patients health history and medical records in order to find more accurate results. I then used Unified Medical Language System to develop indexing of the queries while searching on the Internet and looking for health related documents. UMLS software was actually used to link the computer system with the health and biomedical terms and vocabularies into classify tools; it works as a dictionary for the patients by translating the medical terms. Later I would like to work on using medical ontology to create a relationship between the documents regarding the medical data and my retrieved results

Role of emotion in information retrieval

The main objective of Information Retrieval (IR) systems is to satisfy searchers’ needs. A great deal of research has been conducted in the past to attempt to achieve a better insight into searchers’ needs and the factors that can potentially influence the success of an Information Retrieval and Seeking (IR&S) process. One of the factors which has been considered is searchers’ emotion. It has been shown in previous research that emotion plays an important role in the success of an IR&S process, which has the purpose of satisfying an information need. However, these previous studies do not give a sufficiently prominent position to emotion in IR, since they limit the role of emotion to a secondary factor, by assuming that a lack of knowledge (the need for information) is the primary factor (the motivation of the search). In this thesis, we propose to treat emotion as the principal factor in the system of needs of a searcher, and therefore one that ought to be considered by the retrieval algorithms. We present a more realistic view of searchers’ needs by considering not only theories from information retrieval and science, but also from psychology, philosophy, and sociology. We extensively report on the role of emotion in every aspect of human behaviour, both at an individual and social level. This serves not only to modify the current IR views of emotion, but more importantly to uncover social situations where emotion is the primary factor (i.e., source of motivation) in an IR&S process. We also show that the emotion aspect of documents plays an important part in satisfying the searcher’s need, in particular when emotion is indeed a primary factor. Given the above, we define three concepts, called emotion need, emotion object and emotion relevance, and present a conceptual map that utilises these concepts in IR tasks and scenarios. In order to investigate the practical concepts such as emotion object and emotion relevance in a real-life application, we first study the possibility of extracting emotion from text, since this is the first pragmatic challenge to be solved before any IR task can be tackled. For this purpose, we developed a text-based emotion extraction system and demonstrate that it outperforms other available emotion extraction approaches. Using the developed emotion extraction system, the usefulness of the practical concepts mentioned above is studied in two scenarios: movie recommendation and news diversification. In the movie recommendation scenario, two collaborative filtering (CF) models were proposed. CF systems aim to recommend items to a user, based on the information gathered from other users who have similar interests. CF techniques do not handle data sparsity well, especially in the case of the cold start problem, where there is no past rating for an item. In order to predict the rating of an item for a given user, the first and second models rely on an extension of state-of-the-art memory-based and model-based CF systems. The features used by the models are two emotion spaces extracted from the movie plot summary and the reviews made by users, and three semantic spaces, namely, actor, director, and genre. Experiments with two MovieLens datasets show that the inclusion of emotion information significantly improves the accuracy of prediction when compared with the state-of-the-art CF techniques, and also tackles data sparsity issues. In the news retrieval scenario, a novel way of diversifying results, i.e., diversifying based on the emotion aspect of documents, is proposed. For this purpose, two approaches are introduced to consider emotion features for diversification, and they are empirically tested on the TREC 678 Interactive Track collection. The results show that emotion features are capable of enhancing retrieval effectiveness. Overall, this thesis shows that emotion plays a key role in IR and that its importance needs to be considered. At a more detailed level, it illustrates the crucial part that emotion can play in • searchers, both as a primary (emotion need) and secondary factor (influential role) in an IR&S process; • enhancing the representation of a document using emotion features (emotion object); and finally, • improving the effectiveness of IR systems at satisfying searchers’ needs (emotion relevance)

Knowledge-based Biomedical Data Science 2019

Knowledge-based biomedical data science (KBDS) involves the design and implementation of computer systems that act as if they knew about biomedicine. Such systems depend on formally represented knowledge in computer systems, often in the form of knowledge graphs. Here we survey the progress in the last year in systems that use formally represented knowledge to address data science problems in both clinical and biological domains, as well as on approaches for creating knowledge graphs. Major themes include the relationships between knowledge graphs and machine learning, the use of natural language processing, and the expansion of knowledge-based approaches to novel domains, such as Chinese Traditional Medicine and biodiversity.Comment: Manuscript 43 pages with 3 tables; Supplemental material 43 pages with 3 table