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The Computational Diet: A Review of Computational Methods Across Diet, Microbiome, and Health.
Food and human health are inextricably linked. As such, revolutionary impacts on health have been derived from advances in the production and distribution of food relating to food safety and fortification with micronutrients. During the past two decades, it has become apparent that the human microbiome has the potential to modulate health, including in ways that may be related to diet and the composition of specific foods. Despite the excitement and potential surrounding this area, the complexity of the gut microbiome, the chemical composition of food, and their interplay in situ remains a daunting task to fully understand. However, recent advances in high-throughput sequencing, metabolomics profiling, compositional analysis of food, and the emergence of electronic health records provide new sources of data that can contribute to addressing this challenge. Computational science will play an essential role in this effort as it will provide the foundation to integrate these data layers and derive insights capable of revealing and understanding the complex interactions between diet, gut microbiome, and health. Here, we review the current knowledge on diet-health-gut microbiota, relevant data sources, bioinformatics tools, machine learning capabilities, as well as the intellectual property and legislative regulatory landscape. We provide guidance on employing machine learning and data analytics, identify gaps in current methods, and describe new scenarios to be unlocked in the next few years in the context of current knowledge
Big Data and the Internet of Things
Advances in sensing and computing capabilities are making it possible to
embed increasing computing power in small devices. This has enabled the sensing
devices not just to passively capture data at very high resolution but also to
take sophisticated actions in response. Combined with advances in
communication, this is resulting in an ecosystem of highly interconnected
devices referred to as the Internet of Things - IoT. In conjunction, the
advances in machine learning have allowed building models on this ever
increasing amounts of data. Consequently, devices all the way from heavy assets
such as aircraft engines to wearables such as health monitors can all now not
only generate massive amounts of data but can draw back on aggregate analytics
to "improve" their performance over time. Big data analytics has been
identified as a key enabler for the IoT. In this chapter, we discuss various
avenues of the IoT where big data analytics either is already making a
significant impact or is on the cusp of doing so. We also discuss social
implications and areas of concern.Comment: 33 pages. draft of upcoming book chapter in Japkowicz and Stefanowski
(eds.) Big Data Analysis: New algorithms for a new society, Springer Series
on Studies in Big Data, to appea
Econometrics meets sentiment : an overview of methodology and applications
The advent of massive amounts of textual, audio, and visual data has spurred the development of econometric methodology to transform qualitative sentiment data into quantitative sentiment variables, and to use those variables in an econometric analysis of the relationships between sentiment and other variables. We survey this emerging research field and refer to it as sentometrics, which is a portmanteau of sentiment and econometrics. We provide a synthesis of the relevant methodological approaches, illustrate with empirical results, and discuss useful software
Collaborative Reuse of Streaming Dataflows in IoT Applications
Distributed Stream Processing Systems (DSPS) like Apache Storm and Spark
Streaming enable composition of continuous dataflows that execute persistently
over data streams. They are used by Internet of Things (IoT) applications to
analyze sensor data from Smart City cyber-infrastructure, and make active
utility management decisions. As the ecosystem of such IoT applications that
leverage shared urban sensor streams continue to grow, applications will
perform duplicate pre-processing and analytics tasks. This offers the
opportunity to collaboratively reuse the outputs of overlapping dataflows,
thereby improving the resource efficiency. In this paper, we propose
\emph{dataflow reuse algorithms} that given a submitted dataflow, identifies
the intersection of reusable tasks and streams from a collection of running
dataflows to form a \emph{merged dataflow}. Similar algorithms to unmerge
dataflows when they are removed are also proposed. We implement these
algorithms for the popular Apache Storm DSPS, and validate their performance
and resource savings for 35 synthetic dataflows based on public OPMW workflows
with diverse arrival and departure distributions, and on 21 real IoT dataflows
from RIoTBench.Comment: To appear in IEEE eScience Conference 201
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