12,707 research outputs found

    Soil analysis using visible and near infrared spectroscopy

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    Visible-near infrared diffuse reflectance (vis-NIR) spectroscopy is a fast, non-destructive technique well suited for analyses of some of the essential constituents of the soil. These constituents, mainly clay minerals, organic matter and soil water strongly affect conditions for plant growth and influence plant nutrition. Here we describe the process by which vis–NIR spectroscopy can be used to collect soil spectra in the laboratory. Because it is an indirect technique, the succeeding model calibrations and validations that are necessary to obtain reliable predictions about the soil properties of interest, are also described in the chapter

    Estimation of secondary soil properties by fusion of laboratory and on-line measured vis-NIR spectra

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    Visible and near infrared (vis-NIR) diffuse reflectance spectroscopy has made invaluable contributions to the accurate estimation of soil properties having direct and indirect spectral responses in NIR spectroscopy with measurements made in laboratory, in situ or using on-line (while the sensor is moving) platforms. Measurement accuracies vary with measurement type, for example, accuracy is higher for laboratory than on-line modes. On-line measurement accuracy deteriorates further for secondary (having indirect spectral response) soil properties. Therefore, the aim of this study is to improve on-line measurement accuracy of secondary properties by fusion of laboratory and on-line scanned spectra. Six arable fields were scanned using an on-line sensing platform coupled with a vis-NIR spectrophotometer (CompactSpec by Tec5 Technology for spectroscopy, Germany), with a spectral range of 305-1700 nm. A total of 138 soil samples were collected and used to develop five calibration models: (i) standard, using 100 laboratory scanned samples; (ii) hybrid-1, using 75 laboratory and 25 on-line samples; (iii) hybrid-2, using 50 laboratory and 50 on-line samples; (iv) hybrid-3, using 25 laboratory and 75 on-line samples, and (v) real-time using 100 on-line samples. Partial least squares regression (PLSR) models were developed for soil pH, available potassium (K), magnesium (Mg), calcium (Ca), and sodium (Na) and quality of models were validated using an independent prediction dataset (38 samples). Validation results showed that the standard models with laboratory scanned spectra provided poor to moderate accuracy for on-line prediction, and the hybrid-3 and real-time models provided the best prediction results, although hybrid-2 model with 50% on-line spectra provided equally good results for all properties except for pH and Na. These results suggest that either the real-time model with exclusively on-line spectra or the hybrid model with fusion up to 50% (except for pH and Na) and 75% on-line scanned spectra allows significant improvement of on-line prediction accuracy for secondary soil properties using vis-NIR spectroscopy

    Influence of the number of samples on prediction error of visible and near infrared spectroscopy of selected soil properties at the farm scale.

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    Although visible and near infrared (vis-NIR) spectroscopy has proved to be a fast, inexpensive and relatively accurate tool to measure soil properties, considerable research is required to optimise the calibration procedure and establish robust calibration models. This paper reports on the influence of the number of samples used for the development of farm-scale calibration models for moisture content (MC), total nitrogen (TN) and organic carbon (OC) on the prediction error expressed as root mean square error of prediction (RMSEP). Fresh (wet) soil samples collected from four farms in Czech Republic, Germany, Denmark and the UK were scanned with a fibre type vis-NIR, AgroSpec spectrophotometer (tec5 Technology for Spectroscopy, Germany) with a spectral range of 305 - 2200 nm. Spectra were divided into calibration (two-third) and prediction (one-third) sets and the calibration spectra were subjected to a partial least squares regression (PLSR) with leave-one-out cross validation using Unscrambler 7.8 software (Camo Inc., Oslo, Norway). The RMSEP values of models with large sample number (46 - 84 samples from each farm) were compared with those of models developed using small sample number (25 samples selected from the large sample set of each farm) for the same variation range. Both large set and small set models were validated by the same prediction set for each property. Further PLSR analysis was carried out on samples from the German farm, with different sample number of the calibration set of 25, 50, 75 and 100 samples. Results showed that the large-size dataset models resulted in lower RMSEP values than the small-size dataset models for all the soil properties studied. The results also demonstrated that with the increase in sample number used in the calibration set, RMSEP decreased in almost linear fashion, although the largest decrease was between 25 and 50 samples. Therefore, it is recommended to chose the number of samples according to accuracy required, although 50 soil samples is considered appropriate in this study to establish calibration models of TN, OC and MC with smaller expected prediction errors as compared with smaller sample numbers

    Comparison between random forests, artificial neural networks and gradient boosted machines methods of on-line vis-NIR spectroscopy measurements of soil total nitrogen and total carbon

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    Accurate and detailed spatial soil information about within-field variability is essential for variable-rate applications of farm resources. Soil total nitrogen (TN) and total carbon (TC) are important fertility parameters that can be measured with on-line (mobile) visible and near infrared (vis-NIR) spectroscopy. This study compares the performance of local farm scale calibrations with those based on the spiking of selected local samples from both fields into an European dataset for TN and TC estimation using three modelling techniques, namely gradient boosted machines (GBM), artificial neural networks (ANNs) and random forests (RF). The on-line measurements were carried out using a mobile, fiber type, vis-NIR spectrophotometer (305-2200 nm) (AgroSpec from tec5, Germany), during which soil spectra were recorded in diffuse reflectance mode from two fields in the UK. After spectra pre-processing, the entire datasets were then divided into calibration (75%) and prediction (25%) sets, and calibration models for TN and TC were developed using GBM, ANN and RF with leave-one-out cross-validation. Results of cross-validation showed that the effect of spiking of local samples collected from a field into an European dataset when combined with RF has resulted in the highest coefficients of determination (R-2) values of 0.97 and 0.98, the lowest root mean square error (RMSE) of 0.01% and 0.10%, and the highest residual prediction deviations (RPD) of 5.58 and 7.54, for TN and TC, respectively. Results for laboratory and on-line predictions generally followed the same trend as for cross-validation in one field, where the spiked European dataset-based RF calibration models outperformed the corresponding GBM and ANN models. In the second field ANN has replaced RF in being the best performing. However, the local field calibrations provided lower R-2 and RPD in most cases. Therefore, from a cost-effective point of view, it is recommended to adopt the spiked European dataset-based RF/ANN calibration models for successful prediction of TN and TC under on-line measurement conditions

    Hotspots of soil organic carbon storage revealed by laboratory hyperspectral imaging

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    Subsoil organic carbon (OC) is generally lower in content and more heterogeneous than topsoil OC, rendering it difficult to detect significant differences in subsoil OC storage. We tested the application of laboratory hyperspectral imaging with a variety of machine learning approaches to predict OC distribution in undisturbed soil cores. Using a bias-corrected random forest we were able to reproduce the OC distribution in the soil cores with very good to excellent model goodness-of-fit, enabling us to map the spatial distribution of OC in the soil cores at very high resolution (~53 × 53 µm). Despite a large increase in variance and reduction in OC content with increasing depth, the high resolution of the images enabled statistically powerful analysis in spatial distribution of OC in the soil cores. In contrast to the relatively homogeneous distribution of OC in the plough horizon, the subsoil was characterized by distinct regions of OC enrichment and depletion, including biopores which contained ~2–10 times higher SOC contents than the soil matrix in close proximity. Laboratory hyperspectral imaging enables powerful, fine-scale investigations of the vertical distribution of soil OC as well as hotspots of OC storage in undisturbed samples, overcoming limitations of traditional soil sampling campaigns

    Predicting calcium in grape must and base wine by FT-NIR spectroscopy

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    Calcium content in sparkling wines may not exceed 80 mg/L due to the risk of aggregation with alginate capsules. The high calcium content usually found in wine and must emphasizes the need to develop alternative and appropriate techniques faster and cleaner than atomic absorption spectrometry (AAS). To obtain a robust model to predict calcium content, FT-NIR spectroscopy was used in 98 base white wine samples and 60 must samples from an Alentejo winery. The reference method for calcium determination was AAS technique, with a dry ashing sample procedure, as a prior treatment. Results confirmed the ability of FT-NIR as an alternative technique to AAS, to predict calcium content in grape must and base wine. Advance knowledge of the calcium content in the grape must will help avoid obtaining a mixture of musts with a high calcium content in the same container

    Non-destructive soluble solids content determination for ‘Rocha’ Pear Based on VIS-SWNIR spectroscopy under ‘Real World’ sorting facility conditions

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    In this paper we report a method to determine the soluble solids content (SSC) of 'Rocha' pear (Pyrus communis L. cv. Rocha) based on their short-wave NIR reflectance spectra (500-1100 nm) measured in conditions similar to those found in packinghouse fruit sorting facilities. We obtained 3300 reflectance spectra from pears acquired from different lots, producers and with diverse storage times and ripening stages. The macroscopic properties of the pears, such as size, temperature and SSC were measured under controlled laboratory conditions. For the spectral analysis, we implemented a computational pipeline that incorporates multiple pre-processing techniques including a feature selection procedure, various multivariate regression models and three different validation strategies. This benchmark allowed us to find the best model/preproccesing procedure for SSC prediction from our data. From the several calibration models tested, we have found that Support Vector Machines provides the best predictions metrics with an RMSEP of around 0.82 ∘ Brix and 1.09 ∘ Brix for internal and external validation strategies respectively. The latter validation was implemented to assess the prediction accuracy of this calibration method under more 'real world-like' conditions. We also show that incorporating information about the fruit temperature and size to the calibration models improves SSC predictability. Our results indicate that the methodology presented here could be implemented in existing packinghouse facilities for single fruit SSC characterization.Funding Agency CEOT strategic project UID/Multi/00631/2019 project OtiCalFrut ALG-01-0247-FEDER-033652 Ideias em Caixa 2010, CAIXA GERAL DE DEPOSITOS Fundacao para a Ciencia e a Tecnologia (Ciencia)info:eu-repo/semantics/publishedVersio

    REMOTE SENSING OF FOLIAR NITROGEN IN CULTIVATED GRASSLANDS OF HUMAN DOMINATED LANDSCAPES

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    Foliar nitrogen (N) concentration of plant canopies plays a central role in a number of important ecosystem processes and continues to be an active subject in the field of remote sensing. Previous efforts to estimate foliar N at the landscape scale have primarily focused on intact forests and grasslands using aircraft imaging spectrometry and various techniques of statistical calibration and modeling. The present study was designed to extend this work by examining the potential to estimate the foliar N concentration of residential, agricultural and other cultivated grassland areas within a suburbanizing watershed. In conjunction with ground-based vegetation sampling, we developed Partial Least Squares (PLS) models for predicting mass-based foliar N across management types using input from airborne and field based imaging spectrometers. Results yielded strong predictive relationships for both ground- and aircraft-based sensors across sites that included turf grass, grazed pasture, hayfields and fallow fields. We also report on relationships between imaging spectrometer data and other important variables such as canopy height, biomass, and water content, results from which show strong promise for detection with high quality imaging spectrometry data and suggest that cultivated grassland offer opportunity for empirical study of canopy light dynamics. Finally, we discuss the potential for application of our results, and potential challenges, with data from the planned HyspIRI satellite, which will provide global coverage of data useful for vegetation N estimation

    Near-Infrared Spectroscopy Combined with Multivariate Tools for Analysis of Trace Metals in Environmental Matrices

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    Environmental contamination by trace elements is becoming increasingly important problem worldwide. Trace metals such as cadmium, copper, lead, chromium, and mercury are major environmental pollutants that are predominantly found in areas with high anthropogenic activities. Therefore, there is a need for rapid and reliable tools to assess and monitor the concentration of heavy metal in environmental matrices. A nondestructive, cost-effective, and environmentally friendly procedure based on near-infrared reflectance spectroscopy (NIRS) and chemometric tools has been used as alternative technique for the simultaneous estimation of various heavy metal concentrations in environmental sample. The metal content is estimated by assigning the absorption features of metals associated with molecular vibrations of organic and inorganic functional groups in organic matter, silicates, carbonates, and water at 780–2500 nm in the near-infrared region. This chapter, reviewed the application of NIRS combined with chemometric tools such as multiple linear regression (MLR), principal component regression (PCR), and partial least squares (PLS) regression. The disadvantages and advantages of each chemometric tool are discussed briefly
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