A Comparison between the Post- and Pre-dispersive Near Infrared Spectroscopy in Non-Destructive Brix Prediction Using Artificial Neural Network

Even though near infrared (NIR) spectroscopy have been implemented in determining the Brix of pineapples, no traceable study compares the effects of different acquisition designs. Thus, this study aims to evaluate the prediction performance of both pre- and post-dispersive NIR sensing devices in non-destructive Brix prediction using artificial neural network (ANN). The pre-dispersive device has five narrowband light emitting diodes (LEDs) with different wavelengths and a photodiode detector, whereas the post-dispersive device has a bifurcated fiber optic, a broadband LED, and a spectral sensor. First, the NIR diffuse reflectance was non-destructively collected using both NIR devices. Then, the collected diffuse reflectance was calibrated with the white and dark references, and then pre-processed using normalization and standard normal variate methods. After that, ANNs were built for both devices using the pre-processed data. Results show both devices are suitable for sample screening application with range error ratio (RER) of more than seven. Nevertheless, the ANN that trained using the post-dispersive device outperformed that trained using the pre-dispersive device with an 8.1% improvement of correlation coefficient of prediction (i.e. from 0.6853 to 0.7408), and a 5.7% improvement of root mean square error of prediction (i.e. from 1.3918 to 1.313°Brix)

Investigation of Parameters That Affect the Acquired Near Infrared Diffuse Reflected Signals in Non-Destructive Soluble Solids Content Prediction

Near infrared spectroscopy is a susceptible technique which can be affected by various factors including the surface of samples. According to the Lambertian reflection, the uneven and matte surface of fruits will provide Lambertian light or diffuse reflectance where the light enters the sample tissues and that uniformly reflects out in all orientations. Bunch of researches were carried out using near infrared diffuse reflection mode in non-destructive soluble solids content (SSC) prediction whereas fewer of them studying about the geometrical effects of uneven surface of samples. Thus, this study aims to investigate the parameters that affect the near infrared diffuse reflection signals in non-destructive SSC prediction using intact pineapples. The relationship among the reflectance intensity, measurement positions, and the SSC value was studied. Next, three independent artificial neural networks were separately trained to investigate the geometrical effects on three different measurement positions. Results show that the concave surface of top and bottom parts of pineapples would affect the reflectance of light and consequently deteriorate the predictive model performance. The predictive model of middle part of pineapples achieved the best performance, i.e. root mean square error of prediction (RMSEP) and correlation coefficient of prediction (Rp) of 1.2104 °Brix and 0.7301 respectively

Remote Sensing in Agriculture: State-of-the-Art

The Special Issue on “Remote Sensing in Agriculture: State-of-the-Art” gives an exhaustive overview of the ongoing remote sensing technology transfer into the agricultural sector. It consists of 10 high-quality papers focusing on a wide range of remote sensing models and techniques to forecast crop production and yield, to map agricultural landscape and to evaluate plant and soil biophysical features. Satellite, RPAS, and SAR data were involved. This preface describes shortly each contribution published in such Special Issue

Crown-level mapping of tree species and health from remote sensing of rural and urban forests

Tree species composition and health are key attributes for rural and urban forest biodiversity, and ecosystem services preservation. Remote sensing has facilitated extraordinary advances in estimating and mapping tree species composition and health. Yet previous sensors and algorithms were largely unable to resolve individual tree crowns and discriminate tree species or health classes at this essential spatial scale due to the low image spectral and spatial resolution. However, current available very high spatial resolution (VHR) remote sensing data can begin to resolve individual tree crowns and measure their spectral and structural qualities with unprecedented precision. Moreover, various machine learning algorithms are now available to apply these new data sources toward the discrimination and the mapping of tree species and health classes. The dissertation includes an introductory chapter, three stand-alone manuscripts, and a concluding chapter, each of which support the overarching theme of mapping tree species composition and health using remote sensing images. The first manuscript, now published in the International Journal of Remote Sensing, confirms the utility of combining VHR multi-temporal satellite data with LiDAR datasets for tree species classification using machine learning classifiers at the crown level in a rural forest the Fernow Experimental Forest, West Virginia. This research also evaluates the contribution of each type of spectral, phenological and structural feature for discriminating four tree species: red oak (Quercus rubra), sugar maple (Acer saccharum), tulip poplar (Liriodendron tulipifera), and black cherry (Prunus serotina). The second manuscript investigates the performance of tree species classification in urban settings with three contributions: 1) 12 very high resolution WorldView-3 images (WV-3), whose image acquisition date covering the growing season from April to November; 2) a large forest inventory providing sufficient calibration/validation datasets in Washington D.C.; 3) object-based tree species classification using the RandomForest machine learning algorithm. This manuscript identifies the incremental losses in classification accuracy caused by iteratively expanding the classification to 19 species and 10 genera. It also identifies the optimum pheno-phases and spectral bands for discriminating trees species in urban settings. Building on these promising results from the second manuscript, the third manuscript detect a signal of statistical difference among individual tree health conditions using WorldView-3 images from June 11th, July 30th and August 30th , 2017 in Washington D.C.. It examines six vegetation indices calculated from WorldView-3 images to describe three health condition levels in good, fair and poor, and discusses the effects of green-down phenology for tree health analysis. Overall, this dissertation research contributes to remote sensing research by combining data from both active and passive sensors to discriminate tree species in rural forest. For the species-rich urban settings, this dissertation illustrates the importance of phenology for tree species classification at crown level using VHR remote sensing images. Finally, this dissertation provides important insights on detecting statistical differences among tree health conditions at individual crown-level in the urban environment using VHR remote sensing images

Agricultural Meteorology and Climatology

Agricultural Meteorology and Climatology is an introductory textbook for meteorology and climatology courses at faculties of agriculture and for agrometeorology and agroclimatology courses at faculties whose curricula include these subjects. Additionally, this book may be a useful source of information for practicing agronomists and all those interested in different aspects of weather and climate impacts on agriculture. In times when scientific knowledge and practical experience increase exponentially, it is not a simple matter to prepare a textbook. Therefore we decided not to constrain Agricultural Meteorology and Climatology by its binding pages. Only a part of it is a conventional textbook. The other part includes numerical examples (easy-to-edit worksheets) and recommended additional reading available on-line in digital form. To keep the reader's attention, the book is divided into three sections: Basics, Applications and Agrometeorological Measurements with Numerical Examples

Growth simulation and yield prediction for perennial jujube fruit tree by integrating age into the WOFOST model

peer reviewedMathematical models have been widely employed for the simulation of growth dynamics of annual crops, thereby performing yield prediction, but not for fruit tree species such as jujube tree (Zizyphus jujuba). The objectives of this study were to investigate the potential use of a modified WOFOST model for predicting jujube yield by introducing tree age as a key parameter. The model was established using data collected from dedicated field experiments performed in 2016–2018. Simulated growth dynamics of dry weights of leaves, stems, fruits, total biomass and leaf area index (LAI) agreed well with measured values, showing root mean square error (RMSE) values of 0.143, 0.333, 0.366, 0.624 t ha−1 and 0.19, and R2 values of 0.947, 0.976, 0.985, 0.986 and 0.95, respectively. Simulated phenological development stages for emergence, anthesis and maturity were 2, 3 and 3 days earlier than the observed values, respectively. In addition, in order to predict the yields of trees with different ages, the weight of new organs (initial buds and roots) in each growing season was introduced as the initial total dry weight (TDWI), which was calculated as averaged, fitted and optimized values of trees with the same age. The results showed the evolution of the simulated LAI and yields profiled in response to the changes in TDWI. The modelling performance was significantly improved when it considered TDWI integrated with tree age, showing good global (R2≥0.856, RMSE≤0.68 t ha−1) and local accuracies (mean R2≥0.43, RMSE≤0.70 t ha−1). Furthermore, the optimized TDWI exhibited the highest precision, with globally validated R2 of 0.891 and RMSE of 0.591 t ha−1, and local mean R2 of 0.57 and RMSE of 0.66 t ha−1, respectively. The proposed model was not only verified with the confidence to accurately predict yields of jujube, but it can also provide a fundamental strategy for simulating the growth of other fruit trees

Investigating the potential for detecting Oak Decline using Unmanned Aerial Vehicle (UAV) Remote Sensing

This PhD project develops methods for the assessment of forest condition utilising modern remote sensing technologies, in particular optical imagery from unmanned aerial systems and with Structure from Motion photogrammetry. The research focuses on health threats to the UK’s native oak trees, specifically, Chronic Oak Decline (COD) and Acute Oak Decline (AOD). The data requirements and methods to identify these complex diseases are investigatedusing RGB and multispectral imagery with very high spatial resolution, as well as crown textural information. These image data are produced photogrammetrically from multitemporal unmanned aerial vehicle (UAV) flights, collected during different seasons to assess the influence of phenology on the ability to detect oak decline. Particular attention is given to the identification of declined oak health within the context of semi-natural forests and heterogenous stands. Semi-natural forest environments pose challenges regarding naturally occurring variability. The studies investigate the potential and practical implications of UAV remote sensing approaches for detection of oak decline under these conditions. COD is studied at Speculation Cannop, a section in the Forest of Dean, dominated by 200-year-old oaks, where decline symptoms have been present for the last decade. Monks Wood, a semi-natural woodland in Cambridgeshire, is the study site for AOD, where trees exhibit active decline symptoms. Field surveys at these sites are designed and carried out to produce highly-accurate differential GNSS positional information of symptomatic and control oak trees. This allows the UAV data to be related to COD or AOD symptoms and the validation of model predictions. Random Forest modelling is used to determine the explanatory value of remote sensing-derived metrics to distinguish trees affected by COD or AOD from control trees. Spectral and textural variables are extracted from the remote sensing data using an object-based approach, adopting circular plots around crown centres at individual tree level. Furthermore, acquired UAV imagery is applied to generate a species distribution map, improving on the number of detectable species and spatial resolution from a previous classification using multispectral data from a piloted aircraft. In the production of the map, parameters relevant for classification accuracy, and identification of oak in particular, are assessed. The effect of plot size, sample size and data combinations are studied. With optimised parameters for species classification, the updated species map is subsequently employed to perform a wall-to-wall prediction of individual oak tree condition, evaluating the potential of a full inventory detection of declined health. UAV-acquired data showed potential for discrimination of control trees and declined trees, in the case of COD and AOD. The greatest potential for detecting declined oak condition was demonstrated with narrowband multispectral imagery. Broadband RGB imagery was determined to be unsuitable for a robust distinction between declined and control trees. The greatest explanatory power was found in remotely-sensed spectra related to photosynthetic activity, indicated by the high feature importance of nearinfrared spectra and the vegetation indices NDRE and NDVI. High feature importance was also produced by texture metrics, that describe structural variations within the crown. The findings indicate that the remotely sensed explanatory variables hold significant information regarding changes in leaf chemistry and crown morphology that relate to chlorosis, defoliation and dieback occurring in the course of the decline. In the case of COD, a distinction of symptomatic from control trees was achieved with 75 % accuracy. Models developed for AOD detection yielded AUC scores up to 0.98,when validated on independent sample data. Classification of oak presence was achieved with a User’s accuracy of 97 % and the produced species map generated 95 % overall accuracy across the eight species within the study area in the north-east of Monks Wood. Despite these encouraging results, it was shown that the generalisation of models is unfeasible at this stage and many challenges remain. A wall-to-wall prediction of decline status confirmed the inability to generalise, yielding unrealistic results, with a high number of declined trees predicted. Identified weaknesses of the developed models indicate complexity related to the natural variability of heterogenous forests combined with the diverse symptoms of oak decline. Specific to the presented studies, additional limitations were attributed to limited ground truth, consequent overfitting,the binary classification of oak health status and uncertainty in UAV-acquired reflectance values. Suggestions for future work are given and involve the extension of field sampling with a non-binary dependent variable to reflect the severity of oak decline induced stress. Further technical research on the quality and reliability of UAV remote sensing data is also required

Extrapolating hyperspectral anthocyanin indices to multispectral satellite sensors---applications to fall foliage in New England

Anthocyanin, thought to be a universal indicator of plant stress, is a red pigment found in many plant species and can seen in New England autumns. Detecting its presence is useful for ecosystem analysis and monitoring changes during autumn senescence. Currently fall foliage is subjectively measured; creation of a satellite-based anthocyanin index will provide an objective measurement and enhance understanding of the distribution of plant stress and senescence over large areas. Anthocyanin indices were tested hyperspectrally in a laboratory setting, then indices were simulated for Hyperion, MERIS, MODIS, and Landsat TM/ETM+ to see which most accurately represents changes in anthocyanin concentration, and finally indices were applied to actual imagery. Results of this study found that (1/R564)-(1/R697) was the best approximation for anthocyanin; the red:green ratio was the best overall estimator of anthocyanin using simulated satellite bands; and real imagery from MODIS and MERIS satellite sensors can detect a fall foliage signal