2,671 research outputs found
Forecasting the Progression of Alzheimer's Disease Using Neural Networks and a Novel Pre-Processing Algorithm
Alzheimer's disease (AD) is the most common neurodegenerative disease in
older people. Despite considerable efforts to find a cure for AD, there is a
99.6% failure rate of clinical trials for AD drugs, likely because AD patients
cannot easily be identified at early stages. This project investigated machine
learning approaches to predict the clinical state of patients in future years
to benefit AD research. Clinical data from 1737 patients was obtained from the
Alzheimer's Disease Neuroimaging Initiative (ADNI) database and was processed
using the "All-Pairs" technique, a novel methodology created for this project
involving the comparison of all possible pairs of temporal data points for each
patient. This data was then used to train various machine learning models.
Models were evaluated using 7-fold cross-validation on the training dataset and
confirmed using data from a separate testing dataset (110 patients). A neural
network model was effective (mAUC = 0.866) at predicting the progression of AD
on a month-by-month basis, both in patients who were initially cognitively
normal and in patients suffering from mild cognitive impairment. Such a model
could be used to identify patients at early stages of AD and who are therefore
good candidates for clinical trials for AD therapeutics.Comment: 10 pages; updated acknowledgement
Bidirectional Representation Learning from Transformers using Multimodal Electronic Health Record Data to Predict Depression
Advancements in machine learning algorithms have had a beneficial impact on
representation learning, classification, and prediction models built using
electronic health record (EHR) data. Effort has been put both on increasing
models' overall performance as well as improving their interpretability,
particularly regarding the decision-making process. In this study, we present a
temporal deep learning model to perform bidirectional representation learning
on EHR sequences with a transformer architecture to predict future diagnosis of
depression. This model is able to aggregate five heterogenous and
high-dimensional data sources from the EHR and process them in a temporal
manner for chronic disease prediction at various prediction windows. We applied
the current trend of pretraining and fine-tuning on EHR data to outperform the
current state-of-the-art in chronic disease prediction, and to demonstrate the
underlying relation between EHR codes in the sequence. The model generated the
highest increases of precision-recall area under the curve (PRAUC) from 0.70 to
0.76 in depression prediction compared to the best baseline model. Furthermore,
the self-attention weights in each sequence quantitatively demonstrated the
inner relationship between various codes, which improved the model's
interpretability. These results demonstrate the model's ability to utilize
heterogeneous EHR data to predict depression while achieving high accuracy and
interpretability, which may facilitate constructing clinical decision support
systems in the future for chronic disease screening and early detection.Comment: in IEEE Journal of Biomedical and Health Informatics (2021
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