A 3D US Guidance System for Permanent Breast Seed Implantation: Development and Validation

Permanent breast seed implantation (PBSI) is a promising breast radiotherapy technique that suffers from operator dependence. We propose and have developed an intraoperative 3D ultrasound (US) guidance system for PBSI. A tracking arm mounted to a 3D US scanner registers a needle template to the image. Images were validated for linear and volumetric accuracy, and image quality in a volunteer. The tracking arm was calibrated, and the 3D image registered to the scanner. Tracked and imaged needle positions were compared to assess accuracy and a patient-specific phantom procedure guided with the system. Median/mean linear and volumetric error was ±1.1% and ±4.1%, respectively, with clinically suitable volunteer scans. Mean tracking arm error was 0.43mm and 3D US target registration error ≤0.87mm. Mean needle tip/trajectory error was 2.46mm/1.55°. Modelled mean phantom procedure seed displacement was 2.50mm. To our knowledge, this is the first reported PBSI phantom procedure with intraoperative 3D image guidance

Identification of the Elastic Modulus of an Organ Model Using Reactive Force and Ultrasound Image

制度:新 ; 報告番号:甲3418号 ; 学位の種類:博士(工学) ; 授与年月日:2011/7/28 ; 早大学位記番号:新574

Technologies for Biomechanically-Informed Image Guidance of Laparoscopic Liver Surgery

Laparoscopic surgery for liver resection has a number medical advantages over open surgery, but also comes with inherent technical challenges. The surgeon only has a very limited field of view through the imaging modalities routinely employed intra-operatively, laparoscopic video and ultrasound, and the pneumoperitoneum required to create the operating space and gaining access to the organ can significantly deform and displace the liver from its pre-operative configuration. This can make relating what is visible intra-operatively to the pre-operative plan and inferring the location of sub-surface anatomy a very challenging task. Image guidance systems can help overcome these challenges by updating the pre-operative plan to the situation in theatre and visualising it in relation to the position of surgical instruments. In this thesis, I present a series of contributions to a biomechanically-informed image-guidance system made during my PhD. The most recent one is work on a pipeline for the estimation of the post-insufflation configuration of the liver by means of an algorithm that uses a database of segmented training images of patient abdomens where the post-insufflation configuration of the liver is known. The pipeline comprises an algorithm for inter and intra-subject registration of liver meshes by means of non-rigid spectral point-correspondence finding. My other contributions are more fundamental and less application specific, and are all contained and made available to the public in the NiftySim open-source finite element modelling package. Two of my contributions to NiftySim are of particular interest with regards to image guidance of laparoscopic liver surgery: 1) a novel general purpose contact modelling algorithm that can be used to simulate contact interactions between, e.g., the liver and surrounding anatomy; 2) membrane and shell elements that can be used to, e.g., simulate the Glisson capsule that has been shown to significantly influence the organ’s measured stiffness

A Novel Bio-Inspired Insertion Method for Application to Next Generation Percutaneous Surgical Tools

The use of minimally invasive techniques can dramatically improve patient outcome from neurosurgery, with less risk, faster recovery, and better cost effectiveness when compared to conventional surgical intervention. To achieve this, innovative surgical techniques and new surgical instruments have been developed. Nevertheless, the simplest and most common interventional technique for brain surgery is needle insertion for either diagnostic or therapeutic purposes. The work presented in this thesis shows a new approach to needle insertion into soft tissue, focussing on soft tissue-needle interaction by exploiting microtextured topography and the unique mechanism of a reciprocating motion inspired by the ovipositor of certain parasitic wasps. This thesis starts by developing a brain-like phantom which I was shown to have mechanical properties similar to those of neurological tissue during needle insertion. Secondly, a proof-of-concept of the bio-inspired insertion method was undertaken. Based on this finding, the novel method of a multi-part probe able to penetrate a soft substrate by reciprocal motion of each segment is derived. The advantages of the new insertion method were investigated and compared with a conventional needle insertion in terms of needle-tissue interaction. The soft tissue deformation and damage were also measured by exploiting the method of particle image velocimetry. Finally, the thesis proposes the possible clinical application of a biologically-inspired surface topography for deep brain electrode implantation. As an adjunct to this work, the reciprocal insertion method described here fuelled the research into a novel flexible soft tissue probe for percutaneous intervention, which is able to steer along curvilinear trajectories within a compliant medium. Aspects of this multi-disciplinary research effort on steerable robotic surgery are presented, followed by a discussion of the implications of these findings within the context of future work

Registration of 3D Ultrasound Volumes with Applications in Neurosurgery and Prostate Radiotherapy

Brain tissue deforms significantly after opening the dura and during tumor resection, invalidating pre-operative imaging data. Ultrasound is a popular imaging modality for providing the neurosurgeon with real-time updated images of brain tissue. Interpretation of post-resection ultrasound images is difficult due to large brain shift and tissue resection. Furthermore, several factors degrade the quality of post-resection ultrasound images such as strong reflection of waves at the interface of saline water and brain tissue in resection cavities, air bubbles and the application of blood-clotting agents around the edges of resection. Image registration allows comparison of post-resection ultrasound images with higher quality pre-resection images, assists in interpretation of post-resection images and may help identify residual tumor, and as such, is of significant clinical importance. Prostate motion is known to reduce the precision of prostate radiotherapy. This motion can be categorized into intrafraction and interfraction. Interfraction motion introduces large systematic errors into the treatment and is the largest contributor to prostate planning treatment volume (PTV) margins. Conventional solutions to interfraction motion all have respective drawbacks. Clarity Autoscan system provides continuous ultrasound imaging of the prostate for interfraction motion correction, however it is time-consuming and can have large interobserver errors. The intension of accurately targeting the prostate and reducing the side effects in treatment requests a faster and more accurate registration framework for interfraction motion correction. In this thesis, we first propose a registration framework called Nonrigid Symmetric Registration (NSR) for accurate alignment of pre- and post-resection volumetric ultrasound images in near real-time. An outlier detection algorithm is proposed and utilized in this framework to identify non-corresponding regions (outliers) and therefore improve the robustness and accuracy of registration. We use an Efficient Second-order Minimization (ESM) method for fast and robust optimization. A symmetric and inverse-consistent method is exploited to generate realistic deformation fields. The results show that NSR significantly improves the quality of alignment between pre- and post-resection ultrasound images. Then based on this framework, we develop a rigid registration framework called Prostate Registration Framework (PRF) for alignment of the prosate region in simulation and treatment volumes. PRF is trained using 2 3D transperineal ultrasound (TPUS) images of an ultrasound prostate phantom and 20 3D TPUS images from 11 patients receiving Clarity Autoscan. Algorithm performance is evaluated using further 21 TPUS images from a total of 8 patients by comparison of the PRF with manual matching of landmarks and Clarity-based estimation of interfraction motion performed by three observers. The results show that PRF outputs more accurate alignment of the prosate region in simulation and treatment volumes than Clarity, and further, provides the reposition of the prostate in treatment images efficiently and accurately

Book of Abstracts 15th International Symposium on Computer Methods in Biomechanics and Biomedical Engineering and 3rd Conference on Imaging and Visualization

In this edition, the two events will run together as a single conference, highlighting the strong connection with the Taylor & Francis journals: Computer Methods in Biomechanics and Biomedical Engineering (John Middleton and Christopher Jacobs, Eds.) and Computer Methods in Biomechanics and Biomedical Engineering: Imaging and Visualization (JoãoManuel R.S. Tavares, Ed.). The conference has become a major international meeting on computational biomechanics, imaging andvisualization. In this edition, the main program includes 212 presentations. In addition, sixteen renowned researchers will give plenary keynotes, addressing current challenges in computational biomechanics and biomedical imaging. In Lisbon, for the first time, a session dedicated to award the winner of the Best Paper in CMBBE Journal will take place. We believe that CMBBE2018 will have a strong impact on the development of computational biomechanics and biomedical imaging and visualization, identifying emerging areas of research and promoting the collaboration and networking between participants. This impact is evidenced through the well-known research groups, commercial companies and scientific organizations, who continue to support and sponsor the CMBBE meeting series. In fact, the conference is enriched with five workshops on specific scientific topics and commercial software.info:eu-repo/semantics/draf

Computational ultrasound tissue characterisation for brain tumour resection

In brain tumour resection, it is vital to know where critical neurovascular structuresand tumours are located to minimise surgical injuries and cancer recurrence. Theaim of this thesis was to improve intraoperative guidance during brain tumourresection by integrating both ultrasound standard imaging and elastography in thesurgical workflow. Brain tumour resection requires surgeons to identify the tumourboundaries to preserve healthy brain tissue and prevent cancer recurrence. Thisthesis proposes to use ultrasound elastography in combination with conventionalultrasound B-mode imaging to better characterise tumour tissue during surgery.Ultrasound elastography comprises a set of techniques that measure tissue stiffness,which is a known biomarker of brain tumours. The objectives of the researchreported in this thesis are to implement novel learning-based methods for ultrasoundelastography and to integrate them in an image-guided intervention framework.Accurate and real-time intraoperative estimation of tissue elasticity can guide towardsbetter delineation of brain tumours and improve the outcome of neurosurgery. We firstinvestigated current challenges in quasi-static elastography, which evaluates tissuedeformation (strain) by estimating the displacement between successive ultrasoundframes, acquired before and after applying manual compression. Recent approachesin ultrasound elastography have demonstrated that convolutional neural networkscan capture ultrasound high-frequency content and produce accurate strain estimates.We proposed a new unsupervised deep learning method for strain prediction, wherethe training of the network is driven by a regularised cost function, composed of asimilarity metric and a regularisation term that preserves displacement continuityby directly optimising the strain smoothness. We further improved the accuracy of our method by proposing a recurrent network architecture with convolutional long-short-term memory decoder blocks to improve displacement estimation and spatio-temporal continuity between time series ultrasound frames. We then demonstrateinitial results towards extending our ultrasound displacement estimation method toshear wave elastography, which provides a quantitative estimation of tissue stiffness.Furthermore, this thesis describes the development of an open-source image-guidedintervention platform, specifically designed to combine intra-operative ultrasoundimaging with a neuronavigation system and perform real-time ultrasound tissuecharacterisation. The integration was conducted using commercial hardware andvalidated on an anatomical phantom. Finally, preliminary results on the feasibilityand safety of the use of a novel intraoperative ultrasound probe designed for pituitarysurgery are presented. Prior to the clinical assessment of our image-guided platform,the ability of the ultrasound probe to be used alongside standard surgical equipmentwas demonstrated in 5 pituitary cases