Intraoperative Neurophysiological Monitoring for Endoscopic Endonasal Approaches to the Skull Base: A Technical Guide.

Intraoperative neurophysiological monitoring during endoscopic, endonasal approaches to the skull base is both feasible and safe. Numerous reports have recently emerged from the literature evaluating the efficacy of different neuromonitoring tests during endonasal procedures, making them relatively well-studied. The authors report on a comprehensive, multimodality approach to monitoring the functional integrity of at risk nervous system structures, including the cerebral cortex, brainstem, cranial nerves, corticospinal tract, corticobulbar tract, and the thalamocortical somatosensory system during endonasal surgery of the skull base. The modalities employed include electroencephalography, somatosensory evoked potentials, free-running and electrically triggered electromyography, transcranial electric motor evoked potentials, and auditory evoked potentials. Methodological considerations as well as benefits and limitations are discussed. The authors argue that, while individual modalities have their limitations, multimodality neuromonitoring provides a real-time, comprehensive assessment of nervous system function and allows for safer, more aggressive management of skull base tumors via the endonasal route

Exploration of Reaction Pathways and Chemical Transformation Networks

For the investigation of chemical reaction networks, the identification of all relevant intermediates and elementary reactions is mandatory. Many algorithmic approaches exist that perform explorations efficiently and automatedly. These approaches differ in their application range, the level of completeness of the exploration, as well as the amount of heuristics and human intervention required. Here, we describe and compare the different approaches based on these criteria. Future directions leveraging the strengths of chemical heuristics, human interaction, and physical rigor are discussed.Comment: 48 pages, 4 figure

On the complex dynamics of intracellular ganglion cell light responses in the cat retina

We recorded intracellular responses from cat retinal ganglion cells to sinusoidal flickering lights and compared the response dynamics to a theoretical model based on coupled nonlinear oscillators. Flicker responses for several different spot sizes were separated in a 'smooth' generator (G) potential and eorresponding spike trains. We have previously shown that the G-potential reveals complex, stimulus dependent, oscillatory behavior in response to sinusoidally flickering lights. Such behavior could be simulated by a modified van der Pol oscillator. In this paper, we extend the model to account for spike generation as well, by including extended Hodgkin-Huxley equations describing local membrane properties. We quantified spike responses by several parameters describing the mean and standard deviation of spike burst duration, timing (phase shift) of bursts, and the number of spikes in a burst. The dependence of these response parameters on stimulus frequency and spot size could be reproduced in great detail by coupling the van der Pol oscillator, and Hodgkin-Huxley equations. The model mimics many experimentally observed response patterns, including non-phase-locked irregular oscillations. Our findings suggest that the information in the ganglion cell spike train reflects both intraretinal processing, simulated by the van der Pol oscillator) and local membrane properties described by Hodgkin-Huxley equations. The interplay between these complex processes can be simulated by changing the coupling coefficients between the two oscillators. Our simulations therefore show that irregularities in spike trains, which normally are considered to be noise, may be interpreted as complex oscillations that might earry information.Whitehall Foundation (S93-24

A Comprehensive Workflow for General-Purpose Neural Modeling with Highly Configurable Neuromorphic Hardware Systems

In this paper we present a methodological framework that meets novel requirements emerging from upcoming types of accelerated and highly configurable neuromorphic hardware systems. We describe in detail a device with 45 million programmable and dynamic synapses that is currently under development, and we sketch the conceptual challenges that arise from taking this platform into operation. More specifically, we aim at the establishment of this neuromorphic system as a flexible and neuroscientifically valuable modeling tool that can be used by non-hardware-experts. We consider various functional aspects to be crucial for this purpose, and we introduce a consistent workflow with detailed descriptions of all involved modules that implement the suggested steps: The integration of the hardware interface into the simulator-independent model description language PyNN; a fully automated translation between the PyNN domain and appropriate hardware configurations; an executable specification of the future neuromorphic system that can be seamlessly integrated into this biology-to-hardware mapping process as a test bench for all software layers and possible hardware design modifications; an evaluation scheme that deploys models from a dedicated benchmark library, compares the results generated by virtual or prototype hardware devices with reference software simulations and analyzes the differences. The integration of these components into one hardware-software workflow provides an ecosystem for ongoing preparative studies that support the hardware design process and represents the basis for the maturity of the model-to-hardware mapping software. The functionality and flexibility of the latter is proven with a variety of experimental results

Roadmap on semiconductor-cell biointerfaces.

This roadmap outlines the role semiconductor-based materials play in understanding the complex biophysical dynamics at multiple length scales, as well as the design and implementation of next-generation electronic, optoelectronic, and mechanical devices for biointerfaces. The roadmap emphasizes the advantages of semiconductor building blocks in interfacing, monitoring, and manipulating the activity of biological components, and discusses the possibility of using active semiconductor-cell interfaces for discovering new signaling processes in the biological world

Performance Assessment Strategies

Using engineering performance evaluations to explore design alternatives during the conceptual phase of architectural design helps to understand the relationships between form and performance; and is crucial for developing well-performing final designs. Computer aided conceptual design has the potential to aid the design team in discovering and highlighting these relationships; especially by means of procedural and parametric geometry to support the generation of geometric design, and building performance simulation tools to support performance assessments. However, current tools and methods for computer aided conceptual design in architecture do not explicitly reveal nor allow for backtracking the relationships between performance and geometry of the design. They currently support post-engineering, rather than the early design decisions and the design exploration process. Focusing on large roofs, this research aims at developing a computational design approach to support designers in performance driven explorations. The approach is meant to facilitate the multidisciplinary integration and the learning process of the designer; and not to constrain the process in precompiled procedures or in hard engineering formulations, nor to automatize it by delegating the design creativity to computational procedures. PAS (Performance Assessment Strategies) as a method is the main output of the research. It consists of a framework including guidelines and an extensible library of procedures for parametric modelling. It is structured on three parts. Pre-PAS provides guidelines for a design strategy-definition, toward the parameterization process. Model-PAS provides guidelines, procedures and scripts for building the parametric models. Explore-PAS supports the solutions-assessment based on numeric evaluations and performance simulations, until the identification of a suitable design solution. PAS has been developed based on action research. Several case studies have focused on each step of PAS and on their interrelationships. The relations between the knowledge available in pre-PAS and the challenges of the solution space exploration in explore-PAS have been highlighted. In order to facilitate the explore-PAS phase in case of large solution spaces, the support of genetic algorithms has been investigated and the exiting method ParaGen has been further implemented. Final case studies have focused on the potentials of ParaGen to identify well performing solutions; to extract knowledge during explore-PAS; and to allow interventions of the designer as an alternative to generations driven solely by coded criteria. Both the use of PAS and its recommended future developments are addressed in the thesis