The shape of ecological networks

We study the statistics of ecosystems with a variable number of co-evolving species. The species interact in two ways: by prey-predator relationships and by direct competition with similar kinds. The interaction coefficients change slowly through successful adaptations and speciations. We treat them as quenched random variables. These interactions determine long-term topological features of the species network, which are found to agree with those of biological systems.Comment: 4 pages, 2 figure

Modelling coevolution in multispecies communities

We introduce the Webworld model, which links together the ecological modelling of food web structure with the evolutionary modelling of speciation and extinction events. The model describes dynamics of ecological communities on an evolutionary timescale. Species are defined as sets of characteristic features, and these features are used to determine interaction scores between species. A simple rule is used to transfer resources from the external environment through the food web to each of the species, and to determine mean population sizes. A time step in the model represents a speciation event. A new species is added with features similar to those of one of the existing species and a new food web structure is then calculated. The new species may (i) add stably to the web, (ii) become extinct immediately because it is poorly adapted, or (iii) cause one or more other species to become extinct due to competition for resources. We measure various properties of the model webs and compare these with data on real food webs. These properties include the proportions of basal, intermediate and top species, the number of links per species and the number of trophic levels. We also study the evolutionary dynamics of the model ecosystem by following the fluctuations in the total number of species in the web. Extinction avalanches occur when novel organisms arise which are significantly better adapted than existing ones. We discuss these results in relation to the observed extinction events in the fossil record, and to the theory of self-organized criticality.Comment: 21 pages, 3 Postscript figures, uses psfig.sty Affiliations correcte

A bio-economic model for the ecosystem-based management of the coastal fishery in French Guiana

This paper offers a theoretical and empirical modeling for ecosystem-based fishery management (EBFM). A multi-species and multi-fleets model integrating Lokta-Volterra trophic dynamics and profit functions is developed for the coastal fishery of French Guiana. This small-case fishery constitutes a challenging example with high fish biodiversity, several non selective fleets and a potentially increasing local food demand due to demographic pressure. The dynamic model is calibrated with thirteen species and four fleets using catch and effort data on a monthly basis from 2006 to 2009. Several contrasting fishing scenarios including status quo, total closure, economic and viable strategies are simulated and compared from both biodiversity preservation and socio-economic performance viewpoints. We show that fishing outputs including food supply and profitability of fleets can be sustained although a significant loss of biodiversity cannot be avoided.Small-scale fishery, biodiversity, sustainability, profitability, food security, multi-species, multi-fleets

Species assembly in model ecosystems, II: Results of the assembly process

In the companion paper of this set (Capitan and Cuesta, 2010) we have developed a full analytical treatment of the model of species assembly introduced in Capitan et al. (2009). This model is based on the construction of an assembly graph containing all viable configurations of the community, and the definition of a Markov chain whose transitions are the transformations of communities by new species invasions. In the present paper we provide an exhaustive numerical analysis of the model, describing the average time to the recurrent state, the statistics of avalanches, and the dependence of the results on the amount of available resource. Our results are based on the fact that the Markov chain provides an asymptotic probability distribution for the recurrent states, which can be used to obtain averages of observables as well as the time variation of these magnitudes during succession, in an exact manner. Since the absorption times into the recurrent set are found to be comparable to the size of the system, the end state is quickly reached (in units of the invasion time). Thus, the final ecosystem can be regarded as a fluctuating complex system where species are continually replaced by newcomers without ever leaving the set of recurrent patterns. The assembly graph is dominated by pathways in which most invasions are accepted, triggering small extinction avalanches. Through the assembly process, communities become less resilient (e.g., have a higher return time to equilibrium) but become more robust in terms of resistance against new invasions.Comment: 14 pages, 13 figures. Revised versio

Interplay of spatial dynamics and local adaptation shapes species lifetime distributions and species-area relationships

The distributions of species lifetimes and species in space are related, since species with good local survival chances have more time to colonize new habitats and species inhabiting large areas have higher chances to survive local disturbances. Yet, both distributions have been discussed in mostly separate communities. Here, we study both patterns simultaneously using a spatially explicit, evolutionary community assembly approach. We present and investigate a metacommunity model, consisting of a grid of patches, where each patch contains a local food web. Species survival depends on predation and competition interactions, which in turn depend on species body masses as the key traits. The system evolves due to the migration of species to neighboring patches, the addition of new species as modifications of existing species, and local extinction events. The structure of each local food web thus emerges in a self-organized manner as the highly non-trivial outcome of the relative time scales of these processes. Our model generates a large variety of complex, multi-trophic networks and therefore serves as a powerful tool to investigate ecosystems on long temporal and large spatial scales. We find that the observed lifetime distributions and species-area relations resemble power laws over appropriately chosen parameter ranges and thus agree qualitatively with empirical findings. Moreover, we observe strong finite-size effects, and a dependence of the relationships on the trophic level of the species. By comparing our results to simple neutral models found in the literature, we identify the features that are responsible for the values of the exponents.Comment: Theor Ecol (2019

On the methodology of feeding ecology in fish

Feeding ecology explains predator’s preference to some preys over others in their habitat and their competitions thereof. The subject, as a functional and applied biology, is highly neglected, and in case of fish, a uniform and consistent methodology is absent. The currently practiced methods are largely centred on mathematical indices and highly erroneous because of non-uniform outcomes. Therefore, it requires a relook into the subject to elucidate functional contributions and to make it more comparable and comprehensive science. In this article, approachable methodological strategies have been forwarded in three hierarchical steps, namely, food occurrence, feeding biology and interpretative ecology. All these steps involve wide ranges of techniques, within the scope of ecology but not limited to, and traverse from narrative to functional evolutionary ecology. The first step is an assumption-observation practice to assess food of fish, followed by feeding biology that links morphological, histological, cytological, bacteriological or enzymological correlations to preferred food in the environment. Interpretative ecology is the higher level of analysis in which the outcomes are tested and discussed against evolutionary theories. A description of possible pedagogics on the methods of feeding ecological studies has also been forwarded

Aquatic food security:insights into challenges and solutions from an analysis of interactions between fisheries, aquaculture, food safety, human health, fish and human welfare, economy and environment

Fisheries and aquaculture production, imports, exports and equitability of distribution determine the supply of aquatic food to people. Aquatic food security is achieved when a food supply is sufficient, safe, sustainable, shockproof and sound: sufficient, to meet needs and preferences of people; safe, to provide nutritional benefit while posing minimal health risks; sustainable, to provide food now and for future generations; shock-proof, to provide resilience to shocks in production systems and supply chains; and sound, to meet legal and ethical standards for welfare of animals, people and environment. Here, we present an integrated assessment of these elements of the aquatic food system in the United Kingdom, a system linked to dynamic global networks of producers, processors and markets. Our assessment addresses sufficiency of supply from aquaculture, fisheries and trade; safety of supply given biological, chemical and radiation hazards; social, economic and environmental sustainability of production systems and supply chains; system resilience to social, economic and environmental shocks; welfare of fish, people and environment; and the authenticity of food. Conventionally, these aspects of the food system are not assessed collectively, so information supporting our assessment is widely dispersed. Our assessment reveals trade-offs and challenges in the food system that are easily overlooked in sectoral analyses of fisheries, aquaculture, health, medicine, human and fish welfare, safety and environment. We highlight potential benefits of an integrated, systematic and ongoing process to assess security of the aquatic food system and to predict impacts of social, economic and environmental change on food supply and demand

Marine Strategy Framework Directive - Task Group 4 Report Food Webs

The Marine Strategy Framework Directive (2008/56/EC) (MSFD) requires that the European Commission (by 15 July 2010) should lay down criteria and methodological standards to allow consistency in approach in evaluating the extent to which Good Environmental Status (GES) is being achieved. ICES and JRC were contracted to provide scientific support for the Commission in meeting this obligation. A total of 10 reports have been prepared relating to the descriptors of GES listed in Annex I of the Directive. Eight reports have been prepared by groups of independent experts coordinated by JRC and ICES in response to this contract. In addition, reports for two descriptors (Contaminants in fish and other seafood and Marine Litter) were written by expert groups coordinated by DG SANCO and IFREMER respectively. A Task Group was established for each of the qualitative Descriptors. Each Task Group consisted of selected experts providing experience related to the four marine regions (the Baltic Sea, the North-east Atlantic, the Mediterranean Sea and the Black Sea) and an appropriate scope of relevant scientific expertise. Observers from the Regional Seas Conventions were also invited to each Task Group to help ensure the inclusion of relevant work by those Conventions. This is the report of Task Group 4 Food Webs.JRC.DDG.H.5-Rural, water and ecosystem resource