Learning Discriminative Visual-Text Representation for Polyp Re-Identification

Colonoscopic Polyp Re-Identification aims to match a specific polyp in a large gallery with different cameras and views, which plays a key role for the prevention and treatment of colorectal cancer in the computer-aided diagnosis. However, traditional methods mainly focus on the visual representation learning, while neglect to explore the potential of semantic features during training, which may easily leads to poor generalization capability when adapted the pretrained model into the new scenarios. To relieve this dilemma, we propose a simple but effective training method named VT-ReID, which can remarkably enrich the representation of polyp videos with the interchange of high-level semantic information. Moreover, we elaborately design a novel clustering mechanism to introduce prior knowledge from textual data, which leverages contrastive learning to promote better separation from abundant unlabeled text data. To the best of our knowledge, this is the first attempt to employ the visual-text feature with clustering mechanism for the colonoscopic polyp re-identification. Empirical results show that our method significantly outperforms current state-of-the art methods with a clear margin

Deep Learning-based Solutions to Improve Diagnosis in Wireless Capsule Endoscopy

[eng] Deep Learning (DL) models have gained extensive attention due to their remarkable performance in a wide range of real-world applications, particularly in computer vision. This achievement, combined with the increase in available medical records, has made it possible to open up new opportunities for analyzing and interpreting healthcare data. This symbiotic relationship can enhance the diagnostic process by identifying abnormalities, patterns, and trends, resulting in more precise, personalized, and effective healthcare for patients. Wireless Capsule Endoscopy (WCE) is a non-invasive medical imaging technique used to visualize the entire Gastrointestinal (GI) tract. Up to this moment, physicians meticulously review the captured frames to identify pathologies and diagnose patients. This manual process is time- consuming and prone to errors due to the challenges of interpreting the complex nature of WCE procedures. Thus, it demands a high level of attention, expertise, and experience. To overcome these drawbacks, shorten the screening process, and improve the diagnosis, efficient and accurate DL methods are required. This thesis proposes DL solutions to the following problems encountered in the analysis of WCE studies: pathology detection, anatomical landmark identification, and Out-of-Distribution (OOD) sample handling. These solutions aim to achieve robust systems that minimize the duration of the video analysis and reduce the number of undetected lesions. Throughout their development, several DL drawbacks have appeared, including small and imbalanced datasets. These limitations have also been addressed, ensuring that they do not hinder the generalization of neural networks, leading to suboptimal performance and overfitting. To address the previous WCE problems and overcome the DL challenges, the proposed systems adopt various strategies that utilize the power advantage of Triplet Loss (TL) and Self-Supervised Learning (SSL) techniques. Mainly, TL has been used to improve the generalization of the models, while SSL methods have been employed to leverage the unlabeled data to obtain useful representations. The presented methods achieve State-of-the-art results in the aforementioned medical problems and contribute to the ongoing research to improve the diagnostic of WCE studies.[cat] Els models d’aprenentatge profund (AP) han acaparat molta atenció a causa del seu rendiment en una àmplia gamma d'aplicacions del món real, especialment en visió per ordinador. Aquest fet, combinat amb l'increment de registres mèdics disponibles, ha permès obrir noves oportunitats per analitzar i interpretar les dades sanitàries. Aquesta relació simbiòtica pot millorar el procés de diagnòstic identificant anomalies, patrons i tendències, amb la conseqüent obtenció de diagnòstics sanitaris més precisos, personalitzats i eficients per als pacients. La Capsula endoscòpica (WCE) és una tècnica d'imatge mèdica no invasiva utilitzada per visualitzar tot el tracte gastrointestinal (GI). Fins ara, els metges revisen minuciosament els fotogrames capturats per identificar patologies i diagnosticar pacients. Aquest procés manual requereix temps i és propens a errors. Per tant, exigeix un alt nivell d'atenció, experiència i especialització. Per superar aquests inconvenients, reduir la durada del procés de detecció i millorar el diagnòstic, es requereixen mètodes eficients i precisos d’AP. Aquesta tesi proposa solucions que utilitzen AP per als següents problemes trobats en l'anàlisi dels estudis de WCE: detecció de patologies, identificació de punts de referència anatòmics i gestió de mostres que pertanyen fora del domini. Aquestes solucions tenen com a objectiu aconseguir sistemes robustos que minimitzin la durada de l'anàlisi del vídeo i redueixin el nombre de lesions no detectades. Durant el seu desenvolupament, han sorgit diversos inconvenients relacionats amb l’AP, com ara conjunts de dades petits i desequilibrats. Aquestes limitacions també s'han abordat per assegurar que no obstaculitzin la generalització de les xarxes neuronals, evitant un rendiment subòptim. Per abordar els problemes anteriors de WCE i superar els reptes d’AP, els sistemes proposats adopten diverses estratègies que aprofiten l'avantatge de la Triplet Loss (TL) i les tècniques d’auto-aprenentatge. Principalment, s'ha utilitzat TL per millorar la generalització dels models, mentre que els mètodes d’autoaprenentatge s'han emprat per aprofitar les dades sense etiquetar i obtenir representacions útils. Els mètodes presentats aconsegueixen bons resultats en els problemes mèdics esmentats i contribueixen a la investigació en curs per millorar el diagnòstic dels estudis de WCE

Deep Gradient Learning for Efficient Camouflaged Object Detection

This paper introduces DGNet, a novel deep framework that exploits objectgradient supervision for camouflaged object detection (COD). It decouples thetask into two connected branches, i.e., a context and a texture encoder. Theessential connection is the gradient-induced transition, representing a softgrouping between context and texture features. Benefiting from the simple butefficient framework, DGNet outperforms existing state-of-the-art COD models bya large margin. Notably, our efficient version, DGNet-S, runs in real-time (80fps) and achieves comparable results to the cutting-edge modelJCSOD-CVPR$_{21}$ with only 6.82% parameters. Application results also showthat the proposed DGNet performs well in polyp segmentation, defect detection,and transparent object segmentation tasks. Codes will be made available athttps://github.com/GewelsJI/DGNet.<br

Adapter Learning in Pretrained Feature Extractor for Continual Learning of Diseases

Currently intelligent diagnosis systems lack the ability of continually learning to diagnose new diseases once deployed, under the condition of preserving old disease knowledge. In particular, updating an intelligent diagnosis system with training data of new diseases would cause catastrophic forgetting of old disease knowledge. To address the catastrophic forgetting issue, a novel adapter-based strategy is proposed to help effectively learn a set of new diseases at each round (or task) of continual learning, without changing the shared feature extractor. The learnable lightweight task-specific adapter(s) can be flexibly designed (e.g., two convolutional layers) and then added to the pretrained and fixed feature extractor. Together with a specially designed task-specific head which absorbs all previously learned old diseases as a single 'out-of-distribution' category, task-specific adapter(s) can help the pretrained feature extractor more effectively extract discriminative features between diseases. In addition, a simple yet effective fine-tuning is applied to collaboratively fine-tune multiple task-specific heads such that outputs from different heads are comparable and consequently the appropriate classifier head can be more accurately selected during model inference. Extensive empirical evaluations on three image datasets demonstrate the superior performance of the proposed method in continual learning of new diseases. The source code will be released publicly.Comment: 10 page