Directional instability of microtubule transport in the presence of kinesin and dynein, two opposite polarity motor proteins.

Kinesin and dynein are motor proteins that move in opposite directions along microtubules. In this study, we examine the consequences of having kinesin and dynein (ciliary outer arm or cytoplasmic) bound to glass surfaces interacting with the same microtubule in vitro. Although one might expect a balance of opposing forces to produce little or no net movement, we find instead that microtubules move unidirectionally for several microns (corresponding to hundreds of ATPase cycles by a motor) but continually switch between kinesin-directed and dynein-directed transport. The velocities in the plus-end (0.2-0.3 microns/s) and minus-end (3.5-4 microns/s) directions were approximately half those produced by kinesin (0.5 microns/s) and ciliary dynein (6.7 microns/s) alone, indicating that the motors not contributing to movement can interact with and impose a drag upon the microtubule. By comparing two dyneins with different duty ratios (percentage of time spent in a strongly bound state during the ATPase cycle) and varying the nucleotide conditions, we show that the microtubule attachment times of the two opposing motors as well as their relative numbers determine which motor predominates in this assay. Together, these findings are consistent with a model in which kinesin-induced movement of a microtubule induces a negative strain in attached dyneins which causes them to dissociate before entering a force-generating state (and vice versa); reversals in the direction of transport may require the temporary dissociation of the transporting motor from the microtubule. The bidirectional movements described here are also remarkably similar to the back-and-forth movements of chromosomes during mitosis and membrane vesicles in fibroblasts. These results suggest that the underlying mechanical properties of motor proteins, at least in part, may be responsible for reversals in microtubule-based transport observed in cells

Polar cap magnetic field reversals during solar grand minima: could pores play a role?

We study the magnetic flux carried by pores located outside active regions with sunspots and investigate their possible contribution to the reversal of the global magnetic field of the Sun. We find that they contain a total flux of comparable amplitude to the total magnetic flux contained in polar caps. The pores located at distances of 40--100~Mm from the closest active region have systematically the correct sign to contribute to the polar cap reversal. These pores can predominantly be found in bipolar magnetic regions. We propose that during grand minima of solar activity, such a systematic polarity trend, akin to a weak magnetic (Babcock-Leighton-like) source term could still be operating but was missed by the contemporary observers due to the limited resolving power of their telescopes.Comment: 11 pages, 9 figures, accepted for publication in Astronomy&Astrophysic

Phosphatidylserine polarization is required for proper Cdc42 localization and for development of cell polarity.

We used genetically-encoded fluorescent probes to visualize the distribution of phosphatidylserine (PS) in live S. cerevisiae. The majority of the PS was found to reside in the cytosolic leaflet of the plasma membrane. Remarkably, PS was polarized, accumulating in bud necks, the bud cortex and the tips of mating projections. Polarization required vectorial delivery of PS-enriched secretory and recycling vesicles. Rapid dissipation of the PS gradient is prevented by the slow diffusion of lipids along the plasmalemmal inner leaflet, estimated by photobleaching recovery measurements to be over an order of magnitude slower than in mammalian cells. In mutants lacking PS-synthase the absence of PS was associated with, and likely responsible for impaired polarization of the Cdc42 complex, leading to inhibition of bud emergence, diminished growth rate and abolishment of mating. The results indicate that PS polarization is required for optimal Cdc42 targeting and activation during cell division and mating

The Wiener polarity index of benzenoid systems and nanotubes

In this paper, we consider a molecular descriptor called the Wiener polarity index, which is defined as the number of unordered pairs of vertices at distance three in a graph. Molecular descriptors play a fundamental role in chemistry, materials engineering, and in drug design since they can be correlated with a large number of physico-chemical properties of molecules. As the main result, we develop a method for computing the Wiener polarity index for two basic and most commonly studied families of molecular graphs, benzenoid systems and carbon nanotubes. The obtained method is then used to find a closed formula for the Wiener polarity index of any benzenoid system. Moreover, we also compute this index for zig-zag and armchair nanotubes

The potential of text mining in data integration and network biology for plant research : a case study on Arabidopsis

Despite the availability of various data repositories for plant research, a wealth of information currently remains hidden within the biomolecular literature. Text mining provides the necessary means to retrieve these data through automated processing of texts. However, only recently has advanced text mining methodology been implemented with sufficient computational power to process texts at a large scale. In this study, we assess the potential of large-scale text mining for plant biology research in general and for network biology in particular using a state-of-the-art text mining system applied to all PubMed abstracts and PubMed Central full texts. We present extensive evaluation of the textual data for Arabidopsis thaliana, assessing the overall accuracy of this new resource for usage in plant network analyses. Furthermore, we combine text mining information with both protein-protein and regulatory interactions from experimental databases. Clusters of tightly connected genes are delineated from the resulting network, illustrating how such an integrative approach is essential to grasp the current knowledge available for Arabidopsis and to uncover gene information through guilt by association. All large-scale data sets, as well as the manually curated textual data, are made publicly available, hereby stimulating the application of text mining data in future plant biology studies

The 1991 southern hemisphere complex of activity

We have investigated the development of a complex of activity which took place in the southern hemisphere of the Sun between July 1991 and April 1992. The whole process culminated with the successive formation of two large active regions with sunspot groups NOAA 6850 (September/October) and NOAA 6891 (October/November 1991), both having complicated magnetic fields, but the former without heavy flare activity. We observed the appearance of the individual active regions as the consequence of the development stage of large-scale magnetic fields in the given area of the solar surface, in connection with their longitudinal and latitudinal distribution. We have studied the dynamics of this development on magnetic synoptic charts, as well as on spectroheliograms taken in the K-line of ionized calcium. Our new observations confirm the regularities found earlier and connection of global and local developments with convection. We think that they could become a tool for solar activity prediction and that they could be used for comparative studies of stellar complexes of activity