5,699 research outputs found
High-resolution transport-of-intensity quantitative phase microscopy with annular illumination
For quantitative phase imaging (QPI) based on transport-of-intensity equation
(TIE), partially coherent illumination provides speckle-free imaging,
compatibility with brightfield microscopy, and transverse resolution beyond
coherent diffraction limit. Unfortunately, in a conventional microscope with
circular illumination aperture, partial coherence tends to diminish the phase
contrast, exacerbating the inherent noise-to-resolution tradeoff in TIE
imaging, resulting in strong low-frequency artifacts and compromised imaging
resolution. Here, we demonstrate how these issues can be effectively addressed
by replacing the conventional circular illumination aperture with an annular
one. The matched annular illumination not only strongly boosts the phase
contrast for low spatial frequencies, but significantly improves the practical
imaging resolution to near the incoherent diffraction limit. By incorporating
high-numerical aperture (NA) illumination as well as high-NA objective, it is
shown, for the first time, that TIE phase imaging can achieve a transverse
resolution up to 208 nm, corresponding to an effective NA of 2.66. Time-lapse
imaging of in vitro Hela cells revealing cellular morphology and subcellular
dynamics during cells mitosis and apoptosis is exemplified. Given its
capability for high-resolution QPI as well as the compatibility with widely
available brightfield microscopy hardware, the proposed approach is expected to
be adopted by the wider biology and medicine community.Comment: This manuscript was originally submitted on 20 Feb. 201
3D differential phase contrast microscopy
We demonstrate 3D phase and absorption recovery from partially coherent intensity images captured with a programmable LED array source. Images are captured through-focus with four different illumination patterns. Using first Born and weak object approximations (WOA), a linear 3D differential phase contrast (DPC) model is derived. The partially coherent transfer functions relate the sample's complex refractive index distribution to intensity measurements at varying defocus. Volumetric reconstruction is achieved by a global FFT-based method, without an intermediate 2D phase retrieval step. Because the illumination is spatially partially coherent, the transverse resolution of the reconstructed field achieves twice the NA of coherent systems and improved axial resolution
Optimal illumination scheme for isotropic quantitative differential phase contrast microscopy
Differential phase contrast microscopy (DPC) provides high-resolution quantitative phase distribution of thin transparent samples under multi-axis asymmetric illuminations. Typically, illumination in DPC microscopic systems is designed with 2-axis half-circle amplitude
patterns, which, however, result in a non-isotropic phase contrast transfer function (PTF). Efforts have been made to achieve isotropic DPC by replacing the conventional half-circle illumination aperture with radially asymmetric patterns with 3-axis illumination or gradient amplitude
patterns with 2-axis illumination. Nevertheless, these illumination apertures were empirically designed based on empirical criteria related to the shape of the PTF, leaving the underlying theoretical mechanisms unexplored. Furthermore, the frequency responses of the PTFs under
these engineered illuminations have not been fully optimized, leading to suboptimal phase contrast and signal-to-noise ratio (SNR) for phase reconstruction. In this Letter, we provide a rigorous theoretical analysis about the necessary and sufficient conditions for DPC to achieve
perfectly isotropic PTF. In addition, we derive the optimal illumination scheme to maximize the frequency response for both low and high frequencies (from 0 to 2N Aob j), and meanwhile achieve perfectly isotropic PTF with only 2-axis intensity measurements. We present the derivation, implementation, simulation and experimental results demonstrating the superiority of our method over state-of-the-arts in both phase reconstruction accuracy and noise-robustness.https://arxiv.org/abs/1903.10718Accepted manuscrip
A Fourier-based Solving Approach for the Transport of Intensity Equation without Typical Restrictions
The Transport-of-Intensity equation (TIE) has been proven as a standard
approach for phase retrieval. Some high efficiency solving methods for the TIE,
extensively used in many works, are based on a Fourier-Transform (FT). However,
to solve the TIE by these methods several assumptions have to be made. A common
assumption is that there are no zero values for the intensity distribution
allowed. The two most widespread Fourier-based approaches have further
restrictions. One of these requires the uniformity of the intensity
distribution and the other assumes the collinearity of the intensity and phase
gradients. In this paper, we present an approach, which does not need any of
these assumptions and consequently extends the application domain of the TIE
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Lensfree computational microscopy tools for cell and tissue imaging at the point-of-care and in low-resource settings.
The recent revolution in digital technologies and information processing methods present important opportunities to transform the way optical imaging is performed, particularly toward improving the throughput of microscopes while at the same time reducing their relative cost and complexity. Lensfree computational microscopy is rapidly emerging toward this end, and by discarding lenses and other bulky optical components of conventional imaging systems, and relying on digital computation instead, it can achieve both reflection and transmission mode microscopy over a large field-of-view within compact, cost-effective and mechanically robust architectures. Such high throughput and miniaturized imaging devices can provide a complementary toolset for telemedicine applications and point-of-care diagnostics by facilitating complex and critical tasks such as cytometry and microscopic analysis of e.g., blood smears, Pap tests and tissue samples. In this article, the basics of these lensfree microscopy modalities will be reviewed, and their clinically relevant applications will be discussed
Coherent methods in the X-ray sciences
X-ray sources are developing rapidly and their coherent output is growing
extremely rapidly. The increased coherent flux from modern X-ray sources is
being matched with an associated rapid development in experimental methods.
This article reviews the literature describing the ideas that utilise the
increased brilliance from modern X-ray sources. It explores how ideas in
coherent X-ray science are leading to developments in other areas, and vice
versa. The article describes measurements of coherence properties and uses this
discussion as a base from which to describe partially-coherent diffraction and
X-ray phase contrast imaging, with its applications in materials science,
engineering and medicine. Coherent diffraction imaging methods are reviewed
along with associated experiments in materials science. Proposals for
experiments to be performed with the new X-ray free-electron-lasers are briefly
discussed. The literature on X-ray photon correlation spectroscopy is described
and the features it has in common with other coherent X-ray methods are
identified. Many of the ideas used in the coherent X-ray literature have their
origins in the optical and electron communities and these connections are
explored. A review of the areas in which ideas from coherent X-ray methods are
contributing to methods for the neutron, electron and optical communities is
presented.Comment: A review articel accepted by Advances in Physics. 158 pages, 29
figures, 3 table
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