7,183 research outputs found
Metrics for Graph Comparison: A Practitioner's Guide
Comparison of graph structure is a ubiquitous task in data analysis and
machine learning, with diverse applications in fields such as neuroscience,
cyber security, social network analysis, and bioinformatics, among others.
Discovery and comparison of structures such as modular communities, rich clubs,
hubs, and trees in data in these fields yields insight into the generative
mechanisms and functional properties of the graph.
Often, two graphs are compared via a pairwise distance measure, with a small
distance indicating structural similarity and vice versa. Common choices
include spectral distances (also known as distances) and distances
based on node affinities. However, there has of yet been no comparative study
of the efficacy of these distance measures in discerning between common graph
topologies and different structural scales.
In this work, we compare commonly used graph metrics and distance measures,
and demonstrate their ability to discern between common topological features
found in both random graph models and empirical datasets. We put forward a
multi-scale picture of graph structure, in which the effect of global and local
structure upon the distance measures is considered. We make recommendations on
the applicability of different distance measures to empirical graph data
problem based on this multi-scale view. Finally, we introduce the Python
library NetComp which implements the graph distances used in this work
Large Scale Spectral Clustering Using Approximate Commute Time Embedding
Spectral clustering is a novel clustering method which can detect complex
shapes of data clusters. However, it requires the eigen decomposition of the
graph Laplacian matrix, which is proportion to and thus is not
suitable for large scale systems. Recently, many methods have been proposed to
accelerate the computational time of spectral clustering. These approximate
methods usually involve sampling techniques by which a lot information of the
original data may be lost. In this work, we propose a fast and accurate
spectral clustering approach using an approximate commute time embedding, which
is similar to the spectral embedding. The method does not require using any
sampling technique and computing any eigenvector at all. Instead it uses random
projection and a linear time solver to find the approximate embedding. The
experiments in several synthetic and real datasets show that the proposed
approach has better clustering quality and is faster than the state-of-the-art
approximate spectral clustering methods
Fast Spectral Clustering Using Autoencoders and Landmarks
In this paper, we introduce an algorithm for performing spectral clustering
efficiently. Spectral clustering is a powerful clustering algorithm that
suffers from high computational complexity, due to eigen decomposition. In this
work, we first build the adjacency matrix of the corresponding graph of the
dataset. To build this matrix, we only consider a limited number of points,
called landmarks, and compute the similarity of all data points with the
landmarks. Then, we present a definition of the Laplacian matrix of the graph
that enable us to perform eigen decomposition efficiently, using a deep
autoencoder. The overall complexity of the algorithm for eigen decomposition is
, where is the number of data points and is the number of
landmarks. At last, we evaluate the performance of the algorithm in different
experiments.Comment: 8 Pages- Accepted in 14th International Conference on Image Analysis
and Recognitio
Compressive Spectral Clustering
Spectral clustering has become a popular technique due to its high
performance in many contexts. It comprises three main steps: create a
similarity graph between N objects to cluster, compute the first k eigenvectors
of its Laplacian matrix to define a feature vector for each object, and run
k-means on these features to separate objects into k classes. Each of these
three steps becomes computationally intensive for large N and/or k. We propose
to speed up the last two steps based on recent results in the emerging field of
graph signal processing: graph filtering of random signals, and random sampling
of bandlimited graph signals. We prove that our method, with a gain in
computation time that can reach several orders of magnitude, is in fact an
approximation of spectral clustering, for which we are able to control the
error. We test the performance of our method on artificial and real-world
network data.Comment: 12 pages, 2 figure
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