Hybrid of ant colony optimization and flux variability analysis for improving metabolites production

Metabolic engineering has been successfully used for the production of a variety of useful compounds such as L-phenylalanine and biohydrogen that received high demand on food, pharmaceutical, fossil fuels, and energy industries. Reaction deletion is one of the strategies of in silico metabolic engineering that can alter the metabolism of microbial cells with the objective to get the desired phenotypes. However, due to the size and complexity of metabolic networks, it is difficult to determine the near-optimal set of reactions to be knocked out. The complexity of the metabolic network is also caused by the presence of competing pathway that may interrupt the high production of a desireable metabolite. Consequently, this factor leads to low Biomass-Product Coupled Yield (BPCY), production rate and growth rate. Other than that, inefficiency of existing algorithms in modelling high growth rate and production rate is another problem that should be handled and solved. Therefore, this research proposed a hybrid algorithm comprising Ant Colony Optimization and Flux Variability Analysis (ACOFVA) to identify the best reaction combination to be knocked out to improve the production of desired metabolites in microorganisms. Based on the experimental results, ACOFVA shows an increase in terms of BPCY and production rate of L-Phenylalanine in Yeast and biohydrogen in Cyanobacteria, while maintaining the optimal growth rate for the target organism. Besides, suggested reactions to be knocked out for improving the production yield of L-Phenylalanine and biohydrogen have been identified and validated through the biological database. The algorithm also shows a good performance with better production rate and BPCY of L-Phenylalanine and biohydrogen than existing results

Machine learning in bioprocess development: From promise to practice

Fostered by novel analytical techniques, digitalization and automation, modern bioprocess development provides high amounts of heterogeneous experimental data, containing valuable process information. In this context, data-driven methods like machine learning (ML) approaches have a high potential to rationally explore large design spaces while exploiting experimental facilities most efficiently. The aim of this review is to demonstrate how ML methods have been applied so far in bioprocess development, especially in strain engineering and selection, bioprocess optimization, scale-up, monitoring and control of bioprocesses. For each topic, we will highlight successful application cases, current challenges and point out domains that can potentially benefit from technology transfer and further progress in the field of ML

Modelling the energy harvesting from ceramic-based microbial fuel cells by using a fuzzy logic approach

© 2019 The Author(s) Microbial fuel cells (MFCs) is a promising technology that is able to simultaneously produce bioenergy and treat wastewater. Their potential large-scale application is still limited by the need of optimising their power density. The aim of this study is to simulate the absolute power output by ceramic-based MFCs fed with human urine by using a fuzzy inference system in order to maximise the energy harvesting. For this purpose, membrane thickness, anode area and external resistance, were varied by running a 27-parameter combination in triplicate with a total number of 81 assays performed. Performance indices such as R2 and variance account for (VAF) were employed in order to compare the accuracy of the fuzzy inference system designed with that obtained by using nonlinear multivariable regression. R2 and VAF were calculated as 94.85% and 94.41% for the fuzzy inference system and 79.72% and 65.19% for the nonlinear multivariable regression model, respectively. As a result, these indices revealed that the prediction of the absolute power output by ceramic-based MFCs of the fuzzy-based systems is more reliable than the nonlinear multivariable regression approach. The analysis of the response surface obtained by the fuzzy inference system determines that the maximum absolute power output by the air-breathing set-up studied is 450 μW when the anode area ranged from 160 to 200 cm2, the external loading is approximately 900 Ω and a membrane thickness of 1.6 mm, taking into account that the results also confirm that the latter parameter does not show a significant effect on the power output in the range of values studied

Space life sciences: A status report

The scientific research and supporting technology development conducted in the Space Life Sciences Program is described. Accomplishments of the past year are highlighted. Plans for future activities are outlined. Some specific areas of study include the following: Crew health and safety; What happens to humans in space; Gravity, life, and space; Sustenance in space; Life and planet Earth; Life in the Universe; Promoting good science and good will; Building a future for the space life sciences; and Benefits of space life sciences research

Advances, Synergy, and Perspectives of Machine Learning and Biobased Polymers for Energy, Fuels, and Biochemicals for a Sustainable Future

This review illuminates the pivotal synergy between machine learning (ML) and biopolymers, spotlighting their combined potential to reshape sustainable energy, fuels, and biochemicals. Biobased polymers, derived from renewable sources, have garnered attention for their roles in sustainable energy and fuel sectors. These polymers, when integrated with ML techniques, exhibit enhanced functionalities, optimizing renewable energy systems, storage, and conversion. Detailed case studies reveal the potential of biobased polymers in energy applications and the fuel industry, further showcasing how ML bolsters fuel efficiency and innovation. The intersection of biobased polymers and ML also marks advancements in biochemical production, emphasizing innovations in drug delivery and medical device development. This review underscores the imperative of harnessing the convergence of ML and biobased polymers for future global sustainability endeavors in energy, fuels, and biochemicals. The collective evidence presented asserts the immense promise this union holds for steering a sustainable and innovative trajectory

Technology, Science and Culture

From the success of the first and second volume of this series, we are enthusiastic to continue our discussions on research topics related to the fields of Food Science, Intelligent Systems, Molecular Biomedicine, Water Science, and Creation and Theories of Culture. Our aims are to discuss the newest topics, theories, and research methods in each of the mentioned fields, to promote debates among top researchers and graduate students and to generate collaborative works among them

An Energy-Autonomous Chemical Oxygen Demand Sensor Using a Microbial Fuel Cell and Embedded Machine Learning

The current methods of water quality monitoring tend to be costly, labor-intensive, and off-site. Also, they are not energetically sustainable and often require environmentally damaging power sources such as batteries. Microbial fuel cell (MFC) technology is a promising sustainable alternative to combat these issues due to its low cost, eco-friendly energy generation, and bio-sensing features. Extensive work has been done on using MFCs as bio-sensors or sources of power separately. However, little work has been done toward using MFCs for both applications at the same time. Additionally, previous studies using MFCs for water quality measurement have been mostly limited to laboratory conditions due to the biochemical complexity of the real-world. Another limitation of MFCs is how little power they can generate, requiring the MFC-based systems to have minimal power consumption. This work addresses these challenges and presents an energy-autonomous water quality sensing unit that uses a single MFC both as its sensory input and the sole source of power for computing the chemical oxygen demand (COD). In the proposed unit, geometric features of the voltage profile of the MFC (e.g., peak heights) are used as the inputs to a machine learning algorithm (support vector regression (SVR)). The electrical power generated by the MFC is used to drive a low-power microcontroller which logs the MFC voltage and runs the machine learning algorithm. Experimental evaluation showed that the device is capable of detecting the COD of natural pond water samples accurately (coefficient of determination (R 2 )=0.94). This work is the first demonstration of energy autonomy in an MFC-based sensing unit for measuring water quality and represents a step forward in the development of energy-autonomous sensors for environmental monitoring applications

Chemical Power for Microscopic Robots in Capillaries

The power available to microscopic robots (nanorobots) that oxidize bloodstream glucose while aggregated in circumferential rings on capillary walls is evaluated with a numerical model using axial symmetry and time-averaged release of oxygen from passing red blood cells. Robots about one micron in size can produce up to several tens of picowatts, in steady-state, if they fully use oxygen reaching their surface from the blood plasma. Robots with pumps and tanks for onboard oxygen storage could collect oxygen to support burst power demands two to three orders of magnitude larger. We evaluate effects of oxygen depletion and local heating on surrounding tissue. These results give the power constraints when robots rely entirely on ambient available oxygen and identify aspects of the robot design significantly affecting available power. More generally, our numerical model provides an approach to evaluating robot design choices for nanomedicine treatments in and near capillaries.Comment: 28 pages, 7 figure