42,664 research outputs found
NiftyNet: a deep-learning platform for medical imaging
Medical image analysis and computer-assisted intervention problems are
increasingly being addressed with deep-learning-based solutions. Established
deep-learning platforms are flexible but do not provide specific functionality
for medical image analysis and adapting them for this application requires
substantial implementation effort. Thus, there has been substantial duplication
of effort and incompatible infrastructure developed across many research
groups. This work presents the open-source NiftyNet platform for deep learning
in medical imaging. The ambition of NiftyNet is to accelerate and simplify the
development of these solutions, and to provide a common mechanism for
disseminating research outputs for the community to use, adapt and build upon.
NiftyNet provides a modular deep-learning pipeline for a range of medical
imaging applications including segmentation, regression, image generation and
representation learning applications. Components of the NiftyNet pipeline
including data loading, data augmentation, network architectures, loss
functions and evaluation metrics are tailored to, and take advantage of, the
idiosyncracies of medical image analysis and computer-assisted intervention.
NiftyNet is built on TensorFlow and supports TensorBoard visualization of 2D
and 3D images and computational graphs by default.
We present 3 illustrative medical image analysis applications built using
NiftyNet: (1) segmentation of multiple abdominal organs from computed
tomography; (2) image regression to predict computed tomography attenuation
maps from brain magnetic resonance images; and (3) generation of simulated
ultrasound images for specified anatomical poses.
NiftyNet enables researchers to rapidly develop and distribute deep learning
solutions for segmentation, regression, image generation and representation
learning applications, or extend the platform to new applications.Comment: Wenqi Li and Eli Gibson contributed equally to this work. M. Jorge
Cardoso and Tom Vercauteren contributed equally to this work. 26 pages, 6
figures; Update includes additional applications, updated author list and
formatting for journal submissio
BodyNet: Volumetric Inference of 3D Human Body Shapes
Human shape estimation is an important task for video editing, animation and
fashion industry. Predicting 3D human body shape from natural images, however,
is highly challenging due to factors such as variation in human bodies,
clothing and viewpoint. Prior methods addressing this problem typically attempt
to fit parametric body models with certain priors on pose and shape. In this
work we argue for an alternative representation and propose BodyNet, a neural
network for direct inference of volumetric body shape from a single image.
BodyNet is an end-to-end trainable network that benefits from (i) a volumetric
3D loss, (ii) a multi-view re-projection loss, and (iii) intermediate
supervision of 2D pose, 2D body part segmentation, and 3D pose. Each of them
results in performance improvement as demonstrated by our experiments. To
evaluate the method, we fit the SMPL model to our network output and show
state-of-the-art results on the SURREAL and Unite the People datasets,
outperforming recent approaches. Besides achieving state-of-the-art
performance, our method also enables volumetric body-part segmentation.Comment: Appears in: European Conference on Computer Vision 2018 (ECCV 2018).
27 page
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