JGraphT -- A Java library for graph data structures and algorithms

Mathematical software and graph-theoretical algorithmic packages to efficiently model, analyze and query graphs are crucial in an era where large-scale spatial, societal and economic network data are abundantly available. One such package is JGraphT, a programming library which contains very efficient and generic graph data-structures along with a large collection of state-of-the-art algorithms. The library is written in Java with stability, interoperability and performance in mind. A distinctive feature of this library is the ability to model vertices and edges as arbitrary objects, thereby permitting natural representations of many common networks including transportation, social and biological networks. Besides classic graph algorithms such as shortest-paths and spanning-tree algorithms, the library contains numerous advanced algorithms: graph and subgraph isomorphism; matching and flow problems; approximation algorithms for NP-hard problems such as independent set and TSP; and several more exotic algorithms such as Berge graph detection. Due to its versatility and generic design, JGraphT is currently used in large-scale commercial, non-commercial and academic research projects. In this work we describe in detail the design and underlying structure of the library, and discuss its most important features and algorithms. A computational study is conducted to evaluate the performance of JGraphT versus a number of similar libraries. Experiments on a large number of graphs over a variety of popular algorithms show that JGraphT is highly competitive with other established libraries such as NetworkX or the BGL.Comment: Major Revisio

Best of Two Local Models: Local Centralized and Local Distributed Algorithms

We consider two models of computation: centralized local algorithms and local distributed algorithms. Algorithms in one model are adapted to the other model to obtain improved algorithms. Distributed vertex coloring is employed to design improved centralized local algorithms for: maximal independent set, maximal matching, and an approximation scheme for maximum (weighted) matching over bounded degree graphs. The improvement is threefold: the algorithms are deterministic, stateless, and the number of probes grows polynomially in $\log^* n$, where $n$ is the number of vertices of the input graph. The recursive centralized local improvement technique by Nguyen and Onak~\cite{onak2008} is employed to obtain an improved distributed approximation scheme for maximum (weighted) matching. The improvement is twofold: we reduce the number of rounds from $O(\log n)$ to $O(\log^*n)$ for a wide range of instances and, our algorithms are deterministic rather than randomized

Towards Distributed Two-Stage Stochastic Optimization

The weighted vertex cover problem is concerned with selecting a subset of the vertices that covers a target set of edges with the objective of minimizing the total cost of the selected vertices. We consider a variant of this classic combinatorial optimization problem where the target edge set is not fully known; rather, it is characterized by a probability distribution. Adhering to the model of two-stage stochastic optimization, the execution is divided into two stages so that in the first stage, the decision maker selects some of the vertices based on the probabilistic forecast of the target edge set. Then, in the second stage, the edges in the target set are revealed and in order to cover them, the decision maker can augment the vertex subset selected in the first stage with additional vertices. However, in the second stage, the vertex cost increases by some inflation factor, so the second stage selection becomes more expensive. The current paper studies the two-stage stochastic vertex cover problem in the realm of distributed graph algorithms, where the decision making process (in both stages) is distributed among the vertices of the graph. By combining the stochastic optimization toolbox with recent advances in distributed algorithms for weighted vertex cover, we develop an algorithm that runs in time O(log (?) / ?), sends O(m) messages in total, and guarantees to approximate the optimal solution within a (3 + ?)-ratio, where m is the number of edges in the graph, ? is its maximum degree, and 0 < ? < 1 is a performance parameter

An Order-based Algorithm for Minimum Dominating Set with Application in Graph Mining

Dominating set is a set of vertices of a graph such that all other vertices have a neighbour in the dominating set. We propose a new order-based randomised local search (RLS$_o$) algorithm to solve minimum dominating set problem in large graphs. Experimental evaluation is presented for multiple types of problem instances. These instances include unit disk graphs, which represent a model of wireless networks, random scale-free networks, as well as samples from two social networks and real-world graphs studied in network science. Our experiments indicate that RLS$_o$ performs better than both a classical greedy approximation algorithm and two metaheuristic algorithms based on ant colony optimisation and local search. The order-based algorithm is able to find small dominating sets for graphs with tens of thousands of vertices. In addition, we propose a multi-start variant of RLS$_o$ that is suitable for solving the minimum weight dominating set problem. The application of RLS$_o$ in graph mining is also briefly demonstrated

Approximation Algorithms for Multi-Criteria Traveling Salesman Problems

In multi-criteria optimization problems, several objective functions have to be optimized. Since the different objective functions are usually in conflict with each other, one cannot consider only one particular solution as the optimal solution. Instead, the aim is to compute a so-called Pareto curve of solutions. Since Pareto curves cannot be computed efficiently in general, we have to be content with approximations to them. We design a deterministic polynomial-time algorithm for multi-criteria g-metric STSP that computes (min{1 +g, 2g^2/(2g^2 -2g +1)} + eps)-approximate Pareto curves for all 1/2<=g<=1. In particular, we obtain a (2+eps)-approximation for multi-criteria metric STSP. We also present two randomized approximation algorithms for multi-criteria g-metric STSP that achieve approximation ratios of (2g^3 +2g^2)/(3g^2 -2g +1) + eps and (1 +g)/(1 +3g -4g^2) + eps, respectively. Moreover, we present randomized approximation algorithms for multi-criteria g-metric ATSP (ratio 1/2 + g^3/(1 -3g^2) + eps) for g < 1/sqrt(3)), STSP with weights 1 and 2 (ratio 4/3) and ATSP with weights 1 and 2 (ratio 3/2). To do this, we design randomized approximation schemes for multi-criteria cycle cover and graph factor problems.Comment: To appear in Algorithmica. A preliminary version has been presented at the 4th Workshop on Approximation and Online Algorithms (WAOA 2006

The Maximum Traveling Salesman Problem with Submodular Rewards

In this paper, we look at the problem of finding the tour of maximum reward on an undirected graph where the reward is a submodular function, that has a curvature of $\kappa$, of the edges in the tour. This problem is known to be NP-hard. We analyze two simple algorithms for finding an approximate solution. Both algorithms require $O(|V|^3)$ oracle calls to the submodular function. The approximation factors are shown to be $\frac{1}{2+\kappa}$ and $\max\set{\frac{2}{3(2+\kappa)},2/3(1-\kappa)}$, respectively; so the second method has better bounds for low values of $\kappa$. We also look at how these algorithms perform for a directed graph and investigate a method to consider edge costs in addition to rewards. The problem has direct applications in monitoring an environment using autonomous mobile sensors where the sensing reward depends on the path taken. We provide simulation results to empirically evaluate the performance of the algorithms.Comment: Extended version of ACC 2013 submission (including p-system greedy bound with curvature

Pseudo-Separation for Assessment of Structural Vulnerability of a Network

Based upon the idea that network functionality is impaired if two nodes in a network are sufficiently separated in terms of a given metric, we introduce two combinatorial \emph{pseudocut} problems generalizing the classical min-cut and multi-cut problems. We expect the pseudocut problems will find broad relevance to the study of network reliability. We comprehensively analyze the computational complexity of the pseudocut problems and provide three approximation algorithms for these problems. Motivated by applications in communication networks with strict Quality-of-Service (QoS) requirements, we demonstrate the utility of the pseudocut problems by proposing a targeted vulnerability assessment for the structure of communication networks using QoS metrics; we perform experimental evaluations of our proposed approximation algorithms in this context