HPC memory systems: Implications of system simulation and checkpointing

The memory system is a significant contributor for most of the current challenges in computer architecture: application performance bottlenecks and operational costs in large data-centers as HPC supercomputers. With the advent of emerging memory technologies, the exploration for novel designs on the memory hierarchy for HPC systems is an open invitation for computer architecture researchers to improve and optimize current designs and deployments. System simulation is the preferred approach to perform architectural explorations due to the low cost to prototype hardware systems, acceptable performance estimates, and accurate energy consumption predictions. Despite the broad presence and extensive usage of system simulators, their validation is not standardized; either because the main purpose of the simulator is not meant to mimic real hardware, or because the design assumptions are too narrow on a particular computer architecture topic. This thesis provides the first steps for a systematic methodology to validate system simulators when compared to real systems. We unveil real-machine´s micro-architectural parameters through a set of specially crafted micro-benchmarks. The unveiled parameters are used to upgrade the simulation infrastructure in order to obtain higher accuracy in the simulation domain. To evaluate the accuracy on the simulation domain, we propose the retirement factor, an extension to a well-known application´s performance methodology. Our proposal provides a new metric to measure the impact simulator´s parameter-tuning when looking for the most accurate configuration. We further present the delay queue, a modification to the memory controller that imposes a configurable delay for all memory transactions that reach the main memory devices; evaluated using the retirement factor, the delay queue allows us to identify the sources of deviations between the simulator infrastructure and the real system. Memory accesses directly affect application performance, both in the real-world machine as well as in the simulation accuracy. From single-read access to a unique memory location up to simultaneous read/write operations to a single or multiple memory locations, HPC applications memory usage differs from workload to workload. A property that allows to glimpse on the application´s memory usage is the workload´s memory footprint. In this work, we found a link between HPC workload´s memory footprint and simulation performance. Actual trends on HPC data-center memory deployments and current HPC application’s memory footprint led us to envision an opportunity for emerging memory technologies to include them as part of the reliability support on HPC systems. Emerging memory technologies such as 3D-stacked DRAM are getting deployed in current HPC systems but in limited quantities in comparison with standard DRAM storage making them suitable to use for low memory footprint HPC applications. We exploit and evaluate this characteristic enabling a Checkpoint-Restart library to support a heterogeneous memory system deployed with an emerging memory technology. Our implementation imposes negligible overhead while offering a simple interface to allocate, manage, and migrate data sets between heterogeneous memory systems. Moreover, we showed that the usage of an emerging memory technology it is not a direct solution to performance bottlenecks; correct data placement and crafted code implementation are critical when comes to obtain the best computing performance. Overall, this thesis provides a technique for validating main memory system simulators when integrated in a simulation infrastructure and compared to real systems. In addition, we explored a link between the workload´s memory footprint and simulation performance on current HPC workloads. Finally, we enabled low memory footprint HPC applications with resilience support while transparently profiting from the usage of emerging memory deployments.El sistema de memoria es el mayor contribuidor de los desafíos actuales en el campo de la arquitectura de ordenadores como lo son los cuellos de botella en el rendimiento de las aplicaciones, así como los costos operativos en los grandes centros de datos. Con la llegada de tecnologías emergentes de memoria, existe una invitación para que los investigadores mejoren y optimicen las implementaciones actuales con novedosos diseños en la jerarquía de memoria. La simulación de los ordenadores es el enfoque preferido para realizar exploraciones de arquitectura debido al bajo costo que representan frente a la realización de prototipos físicos, arrojando estimaciones de rendimiento aceptables con predicciones precisas. A pesar del amplio uso de simuladores de ordenadores, su validación no está estandarizada ya sea porque el propósito principal del simulador no es imitar al sistema real o porque las suposiciones de diseño son demasiado específicas. Esta tesis proporciona los primeros pasos hacia una metodología sistemática para validar simuladores de ordenadores cuando son comparados con sistemas reales. Primero se descubren los parámetros de microarquitectura en la máquina real a través de un conjunto de micro-pruebas diseñadas para actualizar la infraestructura de simulación con el fin de mejorar la precisión en el dominio de la simulación. Para evaluar la precisión de la simulación, proponemos "el factor de retiro", una extensión a una conocida herramienta para medir el rendimiento de las aplicaciones, pero enfocada al impacto del ajuste de parámetros en el simulador. Además, presentamos "la cola de retardo", una modificación virtual al controlador de memoria que agrega un retraso configurable a todas las transacciones de memoria que alcanzan la memoria principal. Usando el factor de retiro, la cola de retraso nos permite identificar el origen de las desviaciones entre la infraestructura del simulador y el sistema real. Todos los accesos de memoria afectan directamente el rendimiento de la aplicación. Desde el acceso de lectura a una única localidad memoria hasta operaciones simultáneas de lectura/escritura a una o varias localidades de memoria, una propiedad que permite reflejar el uso de memoria de la aplicación es su "huella de memoria". En esta tesis encontramos un vínculo entre la huella de memoria de las aplicaciones de alto desempeño y su rendimiento en simulación. Las tecnologías de memoria emergentes se están implementando en sistemas de alto desempeño en cantidades limitadas en comparación con la memoria principal haciéndolas adecuadas para su uso en aplicaciones con baja huella de memoria. En este trabajo, habilitamos y evaluamos el uso de un sistema de memoria heterogéneo basado en un sistema emergente de memoria. Nuestra implementación agrega una carga despreciable al mismo tiempo que ofrece una interfaz simple para ubicar, administrar y migrar datos entre sistemas de memoria heterogéneos. Además, demostramos que el uso de una tecnología de memoria emergente no es una solución directa a los cuellos de botella en el desempeño. La implementación es fundamental a la hora de obtener el mejor rendimiento ya sea ubicando correctamente los datos, o bien diseñando código especializado. En general, esta tesis proporciona una técnica para validar los simuladores respecto al sistema de memoria principal cuando se integra en una infraestructura de simulación y se compara con sistemas reales. Además, exploramos un vínculo entre la huella de memoria de la carga de trabajo y el rendimiento de la simulación en cargas de trabajo de aplicaciones de alto desempeño. Finalmente, habilitamos aplicaciones de alto desempeño con soporte de resiliencia mientras que se benefician de manera transparente con el uso de un sistema de memoria emergente.Postprint (published version

Memory Centric Characterization and Analysis of SPEC CPU2017 Suite

In this paper we provide a comprehensive, memory-centric characterization of the SPEC CPU2017 benchmark suite, using a number of mechanisms including dynamic binary instrumentation, measurements on native hardware using hardware performance counters and OS based tools. We present a number of results including working set sizes, memory capacity consumption and, memory bandwidth utilization of various workloads. Our experiments reveal that the SPEC CPU2017 workloads are surprisingly memory intensive, with approximately 50% of all dynamic instructions being memory intensive ones. We also show that there is a large variation in the memory footprint and bandwidth utilization profiles of the entire suite, with some benchmarks using as much as 16 GB of main memory and up to 2.3 GB/s of memory bandwidth. We also perform instruction execution and distribution analysis of the suite and find that the average instruction count for SPEC CPU2017 workloads is an order of magnitude higher than SPEC CPU2006 ones. In addition, we also find that FP benchmarks of the SPEC 2017 suite have higher compute requirements: on average, FP workloads execute three times the number of compute operations as compared to INT workloads.Comment: 12 pages, 133 figures, A short version of this work has been published at "Proceedings of the 2019 ACM/SPEC International Conference on Performance Engineering

Accurate modeling of core and memory locality for proxy generation targeting emerging applications and architectures

Designing optimal computer systems for improved performance and energy efficiency requires architects and designers to have a deep understanding of the end-user workloads. However, many end-users (e.g., large corporations, banks, defense organizations, etc.) are apprehensive to share their applications with designers due to the confidential nature of software code and data. In addition, emerging applications pose significant challenges to early design space exploration due to their long-running nature and the highly complex nature of their software stack that cannot be supported on many early performance models. The above challenges can be overcome by using a proxy benchmark. A miniaturized proxy benchmark can be used as a substitute of the original workload to perform early computer performance evaluation. The process of generating a proxy benchmark consists of extracting a set of key statistics to summarize the behavior of end-user applications through profiling and using the collected statistics to synthesize a representative proxy benchmark. Using such proxy benchmarks can help designers to understand the behavior of end-user’s workloads in a reasonable time without the users having to disclose sensitive information about their workloads. Prior proxy benchmarking schemes leverage micro-architecture independent metrics, derived from detailed simulation tools, to generate proxy benchmarks. However, many emerging workloads do not work reliably with many profiling or simulation tools, in which case it becomes impossible to apply prior proxy generation techniques to generate proxy benchmarks for such complex applications. Furthermore, these techniques model instruction pipeline-level locality in great detail, but abstract out memory locality modeling using simple stride-based models. This results in poor cloning accuracy especially for emerging applications, which have larger memory footprints and complex access patterns. A few detailed cache and memory locality modeling techniques have also been proposed in literature. However, these techniques either model limited locality metrics and suffer from poor cloning accuracy or are fairly accurate, but at the expense of significant metadata overhead. Finally, none of the prior proxy benchmarking techniques model both core and memory locality with high accuracy. As a result, they are not useful for studying system-level performance behavior. Keeping the above key limitations and shortcomings of prior work in mind, this dissertation presents several techniques that expand the frontiers of workload proxy benchmarking, thereby enabling computer designers to gain a better and faster understanding of end-user application behavior without compromising the privileged nature of software or data. This dissertation first presents a core-level proxy benchmark generation methodology that leverages performance metrics derived from hardware performance counter measurements to create miniature proxy benchmarks targeting emerging big-data applications. The presented performance counter based characterization and associated extrapolation into generic parameters for proxy generation enables faster analysis (runs almost at native hardware speeds, unlike prior workload cloning proposals) and proxy generation for emerging applications that do not work with simulators or profiling tools. The generated proxy benchmarks are representative of the performance of the real-world big-data applications, including operating system and run-time effects, and yet converge to results quickly without needing any complex software stack support. Next, to improve upon the accuracy and efficiency of prior memory proxy benchmarking techniques, this dissertation presents a novel memory locality modeling technique that leverages localized pattern detection to create miniature memory proxy benchmarks. The presented technique models memory reference locality by decomposing an application’s memory accesses into a set of independent streams (localized by using address region based localization property), tracking fine-grained patterns within the localized streams and, finally, chaining or interleaving accesses from different localized memory streams to create an ordered proxy memory access sequence. This dissertation further extends the workload cloning approach to Graphics Processing Units (GPUs) and presents a novel proxy generation methodology to model the inherent memory access locality of GPU applications, while also accounting for the GPU’s parallel execution model. The generated memory proxy benchmarks help to enable fast and efficient design space exploration of futuristic memory hierarchies. Finally, this dissertation presents a novel technique to integrate accurate core and memory locality models to create system-level proxy benchmarks targeting emerging applications. This is a new capability that can facilitate efficient overall system (core, cache and memory subsystem) design-space exploration. This dissertation further presents a novel methodology that exploits the synthetic benchmark generation framework to create hypothetical workloads with performance behavior that does not currently exist. Such proxies can be generated to cover anticipated code trends and can represent futuristic workloads before the workloads even exist.Electrical and Computer Engineerin

OpenISA, um conjunto de instruções híbrido

Orientador: Edson BorinTese (doutorado) - Universidade Estadual de Campinas, Instituto de ComputaçãoResumo: OpenISA é concebido como a interface de processadores que pretendem ser altamente flexíveis. Isto é conseguido por meio de três estratégias: em primeiro lugar, o ISA é empiricamente escolhido para ser facilmente traduzido para outros, possibilitando flexibilidade do software no caso de um processador OpenISA físico não estar disponível. Neste caso, não há nenhuma necessidade de aplicar um processador virtual OpenISA em software. O ISA está preparado para ser estaticamente traduzido para outros ISAs. Segundo, o ISA não é um ISA concreto nem um ISA virtual, mas um híbrido com a capacidade de admitir modificações nos opcodes sem afetar a compatibilidade retroativa. Este mecanismo permite que as futuras versões do ISA possam sofrer modificações em vez de extensões simples das versões anteriores, um problema comum com ISA concretos, como o x86. Em terceiro lugar, a utilização de uma licença permissiva permite o ISA ser usado livremente por qualquer parte interessada no projeto. Nesta tese de doutorado, concentramo-nos nas instruções de nível de usuário do OpenISA. A tese discute (1) alternativas para ISAs, alternativas para distribuição de programas e o impacto de cada opção, (2) características importantes de OpenISA para atingir seus objetivos e (3) fornece uma completa avaliação do ISA escolhido com respeito a emulação de desempenho em duas CPUs populares, uma projetada pela Intel e outra pela ARM. Concluímos que a versão do OpenISA apresentada aqui pode preservar desempenho próximo do nativo quando traduzida para outros hospedeiros, funcionando como um modelo promissor para ISAs flexíveis da próxima geração que podem ser facilmente estendidos preservando a compatibilidade. Ainda, também mostramos como isso pode ser usado como um formato de distribuição de programas no nível de usuárioAbstract: OpenISA is designed as the interface of processors that aim to be highly flexible. This is achieved by means of three strategies: first, the ISA is empirically chosen to be easily translated to others, providing software flexibility in case a physical OpenISA processor is not available. Second, the ISA is not a concrete ISA nor a virtual ISA, but a hybrid one with the capability of admitting modifications to opcodes without impacting backwards compatibility. This mechanism allows future versions of the ISA to have real changes instead of simple extensions of previous versions, a common problem with concrete ISAs such as the x86. Third, the use of a permissive license allows the ISA to be freely used by any party interested in the project. In this PhD. thesis, we focus on the user-level instructions of OpenISA. The thesis discusses (1) ISA alternatives, program distribution alternatives and the impact of each choice, (2) important features of OpenISA to achieve its goals and (3) provides a thorough evaluation of the chosen ISA with respect to emulation performance on two popular host CPUs, one from Intel and another from ARM. We conclude that the version of OpenISA presented here can preserve close-to-native performance when translated to other hosts, working as a promising model for next-generation, flexible ISAs that can be easily extended while preserving backwards compatibility. Furthermore, we show how this can also be a program distribution format at user-levelDoutoradoCiência da ComputaçãoDoutor em Ciência da Computação2011/09630-1FAPES

Measuring program similarity for efficient benchmarking and performance analysis of computer systems

textComputer benchmarking involves running a set of benchmark programs to measure performance of a computer system. Modern benchmarks are developed from real applications. Applications are becoming complex and hence modern benchmarks run for a very long time. These benchmarks are also used for performance evaluation in the early design phase of microprocessors. Due to the size of benchmarks and increase in complexity of microprocessor design, the effort required for performance evaluation has increased significantly. This dissertation proposes methodologies to reduce the effort of benchmarking and performance evaluation of computer systems. Identifying a set of programs that can be used in the process of benchmarking can be very challenging. A solution to this problem can start by identifying similarity between programs to capture the diversity in their behavior before they can be considered for benchmarking. The aim of this methodology is to identify redundancy in the set of benchmarks and find a subset of representative benchmarks with the least possible loss of information. This dissertation proposes the use of program characteristics which capture the performance behavior of programs and identifies representative benchmarks applicable over a wide range of system configurations. The use of benchmark subsetting has not been restricted to academic research. Recently, the SPEC CPU subcommittee used the information derived from measuring similarity based on program behavior characteristics between different benchmark candidates as one of the criteria for selecting the SPEC CPU2006 benchmarks. The information of similarity between programs can also be used to predict performance of an application when it is difficult to port the application on different platforms. This is a common problem when a customer wants to buy the best computer system for his application. Performance of a customer's application on a particular system can be predicted using the performance scores of the standard benchmarks on that system and the similarity information between the application and the benchmarks. Similarity between programs is quantified by the distance between them in the space of the measured characteristics, and is appropriately used to predict performance of a new application using the performance scores of its neighbors in the workload space.Electrical and Computer Engineerin