Oscillatory Motor Network Activity During Rest and Movement: An fNIRS Study

Coherent network oscillations (\u3c0.1 Hz) linking distributed brain regions are commonly observed in the brain during both rest and task conditions. What oscillatory network exists and how network oscillations change in connectivity strength, frequency and direction when going from rest to explicit task are topics of recent inquiry. Here, we study network oscillations within the sensorimotor regions of able-bodied individuals using hemodynamic activity as measured by functional near-infrared spectroscopy (fNIRS). Using spectral interdependency methods, we examined how the supplementary motor area (SMA), the left premotor cortex (LPMC) and the left primary motor cortex (LM1) are bound as a network during extended resting state (RS) and between-tasks resting state (btRS), and how the activity of the network changes as participants execute left, right, and bilateral hand (LH, RH, and BH) finger movements. We found: (i) power, coherence and Granger causality (GC) spectra had significant peaks within the frequency band (0.01–0.04 Hz) during RS whereas the peaks shifted to a bit higher frequency range (0.04–0.08 Hz) during btRS and finger movement tasks, (ii) there was significant bidirectional connectivity between all the nodes during RS and unidirectional connectivity from the LM1 to SMA and LM1 to LPMC during btRS, and (iii) the connections from SMA to LM1 and from LPMC to LM1 were significantly modulated in LH, RH, and BH finger movements relative to btRS. The unidirectional connectivity from SMA to LM1 just before the actual task changed to the bidirectional connectivity during LH and BH finger movement. The uni-directionality could be associated with movement suppression and the bi-directionality with preparation, sensorimotor update and controlled execution. These results underscore that fNIRS is an effective tool for monitoring spectral signatures of brain activity, which may serve as an important precursor before monitoring the recovery progress following brain injury

The Relation of Ongoing Brain Activity, Evoked Neural Responses, and Cognition

Ongoing brain activity has been observed since the earliest neurophysiological recordings and is found over a wide range of temporal and spatial scales. It is characterized by remarkably large spontaneous modulations. Here, we review evidence for the functional role of these ongoing activity fluctuations and argue that they constitute an essential property of the neural architecture underlying cognition. The role of spontaneous activity fluctuations is probably best understood when considering both their spatiotemporal structure and their functional impact on cognition. We first briefly argue against a “segregationist” view on ongoing activity, both in time and space, which would selectively associate certain frequency bands or levels of spatial organization with specific functional roles. Instead, we emphasize the functional importance of the full range, from differentiation to integration, of intrinsic activity within a hierarchical spatiotemporal structure. We then highlight the flexibility and context-sensitivity of intrinsic functional connectivity that suggest its involvement in functionally relevant information processing. This role in information processing is pursued by reviewing how ongoing brain activity interacts with afferent and efferent information exchange of the brain with its environment. We focus on the relationship between the variability of ongoing and evoked brain activity, and review recent reports that tie ongoing brain activity fluctuations to variability in human perception and behavior. Finally, these observations are discussed within the framework of the free-energy principle which – applied to human brain function – provides a theoretical account for a non-random, coordinated interaction of ongoing and evoked activity in perception and behavior

Neural, electrophysiological and anatomical basis of brain-network variability and its characteristic changes in mental disorders

Functional brain networks demonstrate significant temporal variability and dynamic reconfiguration even in the resting state. Currently, most studies investigate temporal variability of brain networks at the scale of single (micro) or whole-brain (macro) connectivity. However, the mechanism underlying time-varying properties remains unclear, as the coupling between brain network variability and neural activity is not readily apparent when analysed at either micro or macroscales. We propose an intermediate 15 (meso) scale analysis and characterize temporal variability of the functional architecture associated with a particular region. This yields a topography of variability that reflects the whole-brain and, most importantly, creates an analytical framework to establish the fundamental relationship between variability of regional functional architecture and its neural activity or structural connectivity. We find that temporal variability reflects the dynamical reconfiguration of a brain region into distinct functional modules at different times and may be indicative of brain flexibility and adaptability. Primary and unimodal sensory-motor cortices demon- 20 strate low temporal variability, while transmodal areas, including heteromodal association areas and limbic system, demonstrate the high variability. In particular, regions with highest variability such as hippocampus/parahippocampus, inferior and middle temporal gyrus, olfactory gyrus and caudate are all related to learning, suggesting that the temporal variability may indicate the level of brain adaptability. With simultaneously recorded electroencephalography/functional magnetic resonance imaging and functional magnetic resonance imaging/diffusion tensor imaging data, we also find that variability of regional functional architec- 25 ture is modulated by local blood oxygen level-dependent activity and a-band oscillation, and is governed by the ratio of intra- to inter-community structural connectivity. Application of the mesoscale variability measure to multicentre datasets of three mental disorders and matched controls involving 1180 subjects reveals that those regions demonstrating extreme, i.e. highest/lowest variability in controls are most liable to change in mental disorders. Specifically, we draw attention to the identification of diametrically opposing patterns of variability changes between schizophrenia and attention deficit hyperactivity disorder/autism. 30 Regions of the default-mode network demonstrate lower variability in patients with schizophrenia, but high variability in patients with autism/attention deficit hyperactivity disorder, compared with respective controls. In contrast, subcortical regions, especially the thalamus, show higher variability in schizophrenia patients, but lower variability in patients with attention deficit hyperactivity disorder. The changes in variability of these regions are also closely related to symptom scores. Our work provides insights into the dynamic organization of the resting brain and how it changes in brain disorders. The nodal variability measure may also be 35 potentially useful as a predictor for learning and neural rehabilitation

Neural Basis of Functional Connectivity MRI

The brain is hierarchically organized across a range of scales. While studies based on electrophysiology and anatomy have been fruitful on the micron to millimeter scale, findings based on functional connectivity MRI (fcMRI) suggest that a higher level of brain organization has been largely overlooked. These findings show that the brain is organized into networks, and each network extends across multiple brain areas. This large-scale, across-area brain organization is functionally relevant and stable across subjects, primate species, and levels of consciousness. This dissertation addresses the neural origin of MRI functional connectivity. fcMRI relies on temporal correlation in at-rest blood oxygen level dependent (BOLD) fluctuations. Thus, understanding the neural origin of at-rest BOLD correlation is of critical significance. By shedding light on the origin of the large-scale brain organization captured by fcMRI, it will guide the design and interpretation of fcMRI studies. Prior investigations of the neural basis of BOLD have not addressed the at-rest BOLD correlation, and they have been focusing on task-related BOLD. At-rest BOLD correlation captured by fcMRI likely reflects a distinct physiological process that is different from that of task-related BOLD, since these two kinds of BOLD dynamics are different in their temporal scale, spatial spread, energy consumption, and their dependence on consciousness. To address this issue, we develop a system to simultaneously record oxygen and electrophysiology in at-rest, awake monkeys. We demonstrate that our oxygen measurement, oxygen polarography, captures the same physiological phenomenon as BOLD by showing that task-related polarographic oxygen responses and at-rest polarographic oxygen correlation are similar to those of BOLD. These results validate the use of oxygen polarography as a surrogate for BOLD to address the neural origin of MRI functional connectivity. Next, we show that at-rest oxygen correlation reflects at-rest correlation in electrophysiological signals, especially spiking activity of neurons. Using causality analysis, we show that oxygen is driven by slow changes in raw local field potential levels (slow LFP), and slow LFP itself is driven by spiking activity. These results provide critical support to the idea that oxygen correlation reflects neural activity, and pose significant challenges to the traditional view of neurohemodynamic coupling. In addition, we find that at-rest correlation does not originate from criticality, which has been the dominant hypothesis in the field. Instead, we show that at-rest correlation likely reflects a specific and potentially localized oscillatory process. We suggest that this oscillatory process could be a result of the delayed negative feedback loop between slow LFP and spiking activity. Thus, we conclude that at-rest BOLD correlation captured by fcMRI is driven by at-rest slow LFP correlation, which is itself driven by spiking activity correlation. The at-rest spiking activity correlation, itself, is likely driven by an oscillatory process. Future studies combining recording with interventional approaches, like pharmacological manipulation and microstimulation, will help to elucidate the circuitry underlying the oscillatory process and its potential functional role

Fluorescence Imaging of Cortical Calcium Dynamics: A Tool for Visualizing Mouse Brain Functions, Connections, and Networks

Hemodynamic-based markers of cortical activity (e.g. functional magnetic resonance imaging (fMRI) and optical intrinsic signal imaging) are an indirect and relatively slow report of neural activity driven by electrical and metabolic activity through neurovascular coupling, which presents significant limiting factors in deducing underlying brain network dynamics. As application of resting state functional connectivity (FC) measures is extended further into topics such as brain development, aging, and disease, the importance of understanding the fundamental basis for FC will grow. In this dissertation, we extend functional analysis from hemodynamic- to calcium-based imaging. Transgenic mice expressing a fluorescent calcium indicator (GCaMP6) driven by the Thy1 promoter in glutamatergic neurons were imaged transcranially in both anesthetized (using ketaminze/xylazine) and awake states. Sequential LED illumination (λ=470, 530, 590, 625nm) enabled concurrent imaging of both GCaMP6 fluorescence emission (corrected for hemoglobin absorption) and hemodynamics. EEG measurements of the global cortical field potential were also simultaneously acquired. First, we validated the ability of our system to capture GCaMP6 fluorescence emission and hemodynamics by implementing an electrical somatosensory stimulation paradigm. The neural origins of the GCaMP6 fluorescent signal were further confirmed by histology and by comparing the spectral content of imaged GCaMP6 activity to concurrently-acquired EEG. We then constructed seed-based FC and coherence network maps for low (0.009-0.08Hz) and high, delta-band (0.4-4.0Hz) frequency bands using GCaMP6 and hemodynamic contrasts. Homotopic GCaMP6 FC maps using delta-band data in the anesthetized states show a striking correlated and anti-correlated structure along the anterior to posterior axis. We next used whole-brain delay analysis to characterize this correlative feature. This structure is potentially explained by the observed propagation of delta-band activity from frontal somatomotor regions to visuoparietal areas, likely corresponding to propagating delta waves associated with slow wave sleep. During wakefulness, this spatio-temporal structure is largely absent, and a more complex and detailed FC structure is observed. Collectively, functional neuroimaging of calcium dynamics in mice provides evidence that spatiotemporal coherence in cortical activity is not exclusive to hemodynamics and exists over a larger range of frequencies than hemoglobin-based contrasts. Concurrent calcium and hemodynamic imaging enables direct temporal and functional comparison of spontaneous calcium and hemoglobin activity, effectively spanning neurovascular coupling and functional hyperemia. The combined calcium/hemoglobin imaging technique described here will enable the dissociation of changes in ionic and hemodynamic functional structure and provide a framework for subsequent studies of sleep disorders and neurological disease

Brain Connectivity changes after Stroke and Rehabilitation

Several cortical and subcortical areas of brain interact coherently during various tasks such as motor-imagery (MI) and motor-execution (ME) and even during resting-state (RS). How these interactions are affected following stroke and how the functional organization is regained from rehabilitative treatments as people begin to recover have not been systematically studied. Role of primary motor area during MI task and how this differs during ME task are still questions of interest. To answer such questions, we recorded functional magnetic resonance imaging (fMRI) signals from 30 participants: 17 young healthy controls and 13 aged stroke survivors following stroke and following rehabilitation - either mental practice (MP) or combined session of mental practice and physical therapy (MP + PT). All the participants performed RS task whereas stroke survivors performed MI and ME tasks as well. We investigated the activity of motor network consisting of the left primary motor area (LM1), the right primary motor area (RM1), the left pre-motor cortex (LPMC), the right pre-motor cortex (RPMC) and the midline supplementary motor area (SMA). In this dissertation, first, we report that during RS the causal information flow (i) between the regions was reduced significantly following stroke (ii) did not increase significantly after MP alone and (iii) among the regions after MP+PT increased significantly towards the causal flow values for young able-bodied people. Second, we found that there was suppressive influence of SMA on M1 during MI task where as the influence was unrestricted during ME task. We reported that following intervention the connection between PMC and M1 was stronger during MI task whereas along with connection from PMC to M1, SMA to M1 also dominated during ME task. Behavioral results showed significant improvement in sensation and motor scores and significant correlation between differences in Fugl-Meyer Assessment (FMA) scores and differences in causal flow values as well differences in endogenous connectivity measures before and after intervention. We conclude that the spectra of causal information flow can be used as a reliable biomarker for evaluating rehabilitation in stroke survivors. These studies deepen our understanding of motor network activity during the recovery of motor behaviors in stroke. Understanding the stroke specific effective connectivity may be clinically beneficial in identifying effective treatments to maximize functional recovery in stroke survivors

FMRI resting slow fluctuations correlate with the activity of fast cortico-cortical physiological connections

Recording of slow spontaneous fluctuations at rest using functional magnetic resonance imaging (fMRI) allows distinct long-range cortical networks to be identified. The neuronal basis of connectivity as assessed by resting-state fMRI still needs to be fully clarified, considering that these signals are an indirect measure of neuronal activity, reflecting slow local variations in de-oxyhaemoglobin concentration. Here, we combined fMRI with multifocal transcranial magnetic stimulation (TMS), a technique that allows the investigation of the causal neurophysiological interactions occurring in specific cortico-cortical connections. We investigated whether the physiological properties of parieto-frontal circuits mapped with short-latency multifocal TMS at rest may have some relationship with the resting-state fMRI measures of specific resting-state functional networks (RSNs). Results showed that the activity of fast cortico-cortical physiological interactions occurring in the millisecond range correlated selectively with the coupling of fMRI slow oscillations within the same cortical areas that form part of the dorsal attention network, i.e., the attention system believed to be involved in reorientation of attention. We conclude that resting-state fMRI ongoing slow fluctuations likely reflect the interaction of underlying physiological cortico-cortical connections

A Quest for Meaning in Spontaneous Brain Activity - From fMRI to Electrophysiology to Complexity Science

The brain is not a silent, complex input/output system waiting to be driven by external stimuli; instead, it is a closed, self-referential system operating on its own with sensory information modulating rather than determining its activity. Ongoing spontaneous brain activity costs the majority of the brain\u27s energy budget, maintains the brain\u27s functional architecture, and makes predictions about the environment and the future. I have completed three separate studies on the functional significance and the organization of spontaneous brain activity. The first study showed that strokes disrupt large-scale network coherence in the spontaneous functional magnetic resonance imaging: fMRI) signals, and that the degree of such disruption predicts the behavioral impairment of the patient. This study established the functional significance of coherent patterns in the spontaneous fMRI signals. In the second study, by combining fMRI and electrophysiology in neurosurgical patients, I identified the neurophysiological signal underlying the coherent patterns in the spontaneous fMRI signal, the slow cortical potential: SCP). The SCP is a novel neural correlate of the fMRI signal, most likely underlying both spontaneous fMRI signal fluctuations and task-evoked fMRI responses. Some theoretical considerations have led me to propose a hypothesis on the involvement of the neural activity indexed by the SCP in the emergence of consciousness. In the last study I investigated the temporal organization across a wide range of frequencies in the spontaneous electrical field potentials recorded from the human brain. This study demonstrated that the arrhythmic, scale-free brain activity often discarded in human and animal electrophysiology studies in fact contains rich, complex structures, and further provided evidence supporting the functional significance of such activity

Brain connectivity studied by fMRI: homologous network organization in the rat, monkey, and human

The mammalian brain is composed of functional networks operating at different spatial and temporal scales — characterized by patterns of interconnections linking sensory, motor, and cognitive systems. Assessment of brain connectivity has revealed that the structure and dynamics of large-scale network organization are altered in multiple disease states suggesting their use as diagnostic or prognostic indicators. Further investigation into the underlying mechanisms, organization, and alteration of large-scale brain networks requires homologous animal models that would allow neurophysiological recordings and experimental manipulations. My current dissertation presents a comprehensive assessment and comparison of rat, macaque, and human brain networks based on evaluation of intrinsic low-frequency fluctuations of the blood oxygen-level-dependent (BOLD) fMRI signal. The signal fluctuations, recorded in the absence of any task paradigm, have been shown to reflect anatomical connectivity and are presumed to be a hemodynamic manifestation of slow fluctuations in neuronal activity. Importantly, the technique circumvents many practical limitations of other methodologies and can be compared directly between multiple species. Networks of all species were found underlying multiple levels of sensory, motor, and cognitive processing. Remarkable homologous functional connectivity was found across all species, however network complexity was dramatically increased in primate compared to rodent species. Spontaneous temporal dynamics of the resting-state networks were also preserved across species. The results demonstrate that rats and macaques share remarkable homologous network organization with humans, thereby providing strong support for their use as an animal model in the study of normal and abnormal brain connectivity as well as aiding the interpretation of electrophysiological recordings within the context of large-scale brain networks