Dimers, Tilings and Trees

Generalizing results of Temperley, Brooks, Smith, Stone and Tutte and others we describe a natural equivalence between three planar objects: weighted bipartite planar graphs; planar Markov chains; and tilings with convex polygons. This equivalence provides a measure-preserving bijection between dimer coverings of a weighted bipartite planar graph and spanning trees on the corresponding Markov chain. The tilings correspond to harmonic functions on the Markov chain and to ``discrete analytic functions'' on the bipartite graph. The equivalence is extended to infinite periodic graphs, and we classify the resulting ``almost periodic'' tilings and harmonic functions.Comment: 23 pages, 5 figure

Element-centric clustering comparison unifies overlaps and hierarchy

Clustering is one of the most universal approaches for understanding complex data. A pivotal aspect of clustering analysis is quantitatively comparing clusterings; clustering comparison is the basis for many tasks such as clustering evaluation, consensus clustering, and tracking the temporal evolution of clusters. In particular, the extrinsic evaluation of clustering methods requires comparing the uncovered clusterings to planted clusterings or known metadata. Yet, as we demonstrate, existing clustering comparison measures have critical biases which undermine their usefulness, and no measure accommodates both overlapping and hierarchical clusterings. Here we unify the comparison of disjoint, overlapping, and hierarchically structured clusterings by proposing a new element-centric framework: elements are compared based on the relationships induced by the cluster structure, as opposed to the traditional cluster-centric philosophy. We demonstrate that, in contrast to standard clustering similarity measures, our framework does not suffer from critical biases and naturally provides unique insights into how the clusterings differ. We illustrate the strengths of our framework by revealing new insights into the organization of clusters in two applications: the improved classification of schizophrenia based on the overlapping and hierarchical community structure of fMRI brain networks, and the disentanglement of various social homophily factors in Facebook social networks. The universality of clustering suggests far-reaching impact of our framework throughout all areas of science

An extensive English language bibliography on graph theory and its applications

Bibliography on graph theory and its application

Digraph based determination of Jordan block size structure of singular matrix pencils

AbstractThe generic Jordan block sizes corresponding to multiple characteristic roots at zero and at infinity of a singular matrix pencil will be determined graph-theoretically. An application of this technique to detect certain controllability properties of linear time-invariant differential algebraic equations is discussed

Morse theory on spaces of braids and Lagrangian dynamics

In the first half of the paper we construct a Morse-type theory on certain spaces of braid diagrams. We define a topological invariant of closed positive braids which is correlated with the existence of invariant sets of parabolic flows defined on discretized braid spaces. Parabolic flows, a type of one-dimensional lattice dynamics, evolve singular braid diagrams in such a way as to decrease their topological complexity; algebraic lengths decrease monotonically. This topological invariant is derived from a Morse-Conley homotopy index and provides a gloablization of `lap number' techniques used in scalar parabolic PDEs. In the second half of the paper we apply this technology to second order Lagrangians via a discrete formulation of the variational problem. This culminates in a very general forcing theorem for the existence of infinitely many braid classes of closed orbits.Comment: Revised version: numerous changes in exposition. Slight modification of two proofs and one definition; 55 pages, 20 figure