Motion correction of PET/CT images

Indiana University-Purdue University Indianapolis (IUPUI)The advances in health care technology help physicians make more accurate diagnoses about the health conditions of their patients. Positron Emission Tomography/Computed Tomography (PET/CT) is one of the many tools currently used to diagnose health and disease in patients. PET/CT explorations are typically used to detect: cancer, heart diseases, disorders in the central nervous system. Since PET/CT studies can take up to 60 minutes or more, it is impossible for patients to remain motionless throughout the scanning process. This movements create motion-related artifacts which alter the quantitative and qualitative results produced by the scanning process. The patient's motion results in image blurring, reduction in the image signal to noise ratio, and reduced image contrast, which could lead to misdiagnoses. In the literature, software and hardware-based techniques have been studied to implement motion correction over medical files. Techniques based on the use of an external motion tracking system are preferred by researchers because they present a better accuracy. This thesis proposes a motion correction system that uses 3D affine registrations using particle swarm optimization and an off-the-shelf Microsoft Kinect camera to eliminate or reduce errors caused by the patient's motion during a medical imaging study

Thin Cap Fibroatheroma Detection in Virtual Histology Images Using Geometric and Texture Features

Atherosclerotic plaque rupture is the most common mechanism responsible for a majority of sudden coronary deaths. The precursor lesion of plaque rupture is thought to be a thin cap fibroatheroma (TCFA), or “vulnerable plaque”. Virtual Histology-Intravascular Ultrasound (VH-IVUS) images are clinically available for visualising colour-coded coronary artery tissue. However, it has limitations in terms of providing clinically relevant information for identifying vulnerable plaque. The aim of this research is to improve the identification of TCFA using VH-IVUS images. To more accurately segment VH-IVUS images, a semi-supervised model is developed by means of hybrid K-means with Particle Swarm Optimisation (PSO) and a minimum Euclidean distance algorithm (KMPSO-mED). Another novelty of the proposed method is fusion of different geometric and informative texture features to capture the varying heterogeneity of plaque components and compute a discriminative index for TCFA plaque, while the existing research on TCFA detection has only focused on the geometric features. Three commonly used statistical texture features are extracted from VH-IVUS images: Local Binary Patterns (LBP), Grey Level Co-occurrence Matrix (GLCM), and Modified Run Length (MRL). Geometric and texture features are concatenated in order to generate complex descriptors. Finally, Back Propagation Neural Network (BPNN), kNN (K-Nearest Neighbour), and Support Vector Machine (SVM) classifiers are applied to select the best classifier for classifying plaque into TCFA and Non-TCFA. The present study proposes a fast and accurate computer-aided method for plaque type classification. The proposed method is applied to 588 VH-IVUS images obtained from 10 patients. The results prove the superiority of the proposed method, with accuracy rates of 98.61% for TCFA plaque.This research was funded by Universiti Teknologi Malaysia (UTM) under Research University Grant Vot-02G31, and the Ministry of Higher Education Malaysia (MOHE) under the Fundamental Research Grant Scheme (FRGS Vot-4F551) for the completion of the research. The work and the contribution were also supported by the project Smart Solutions in Ubiquitous Computing Environments, Grant Agency of Excellence, University of Hradec Kralove, Faculty of Informatics and Management, Czech Republic (under ID: UHK-FIM-GE-2018). Furthermore, the research is also partially supported by the Spanish Ministry of Science, Innovation and Universities with FEDER funds in the project TIN2016-75850-R

Quantum-classical generative models for machine learning

The combination of quantum and classical computational resources towards more effective algorithms is one of the most promising research directions in computer science. In such a hybrid framework, existing quantum computers can be used to their fullest extent and for practical applications. Generative modeling is one of the applications that could benefit the most, either by speeding up the underlying sampling methods or by unlocking more general models. In this work, we design a number of hybrid generative models and validate them on real hardware and datasets. The quantum-assisted Boltzmann machine is trained to generate realistic artificial images on quantum annealers. Several challenges in state-of-the-art annealers shall be overcome before one can assess their actual performance. We attack some of the most pressing challenges such as the sparse qubit-to-qubit connectivity, the unknown effective-temperature, and the noise on the control parameters. In order to handle datasets of realistic size and complexity, we include latent variables and obtain a more general model called the quantum-assisted Helmholtz machine. In the context of gate-based computers, the quantum circuit Born machine is trained to encode a target probability distribution in the wavefunction of a set of qubits. We implement this model on a trapped ion computer using low-depth circuits and native gates. We use the generative modeling performance on the canonical Bars-and-Stripes dataset to design a benchmark for hybrid systems. It is reasonable to expect that quantum data, i.e., datasets of wavefunctions, will become available in the future. We derive a quantum generative adversarial network that works with quantum data. Here, two circuits are optimized in tandem: one tries to generate suitable quantum states, the other tries to distinguish between target and generated states

MATLAB

A well-known statement says that the PID controller is the "bread and butter" of the control engineer. This is indeed true, from a scientific standpoint. However, nowadays, in the era of computer science, when the paper and pencil have been replaced by the keyboard and the display of computers, one may equally say that MATLAB is the "bread" in the above statement. MATLAB has became a de facto tool for the modern system engineer. This book is written for both engineering students, as well as for practicing engineers. The wide range of applications in which MATLAB is the working framework, shows that it is a powerful, comprehensive and easy-to-use environment for performing technical computations. The book includes various excellent applications in which MATLAB is employed: from pure algebraic computations to data acquisition in real-life experiments, from control strategies to image processing algorithms, from graphical user interface design for educational purposes to Simulink embedded systems

A Compressed Sampling and Dictionary Learning Framework for WDM-Based Distributed Fiber Sensing

We propose a compressed sampling and dictionary learning framework for fiber-optic sensing using wavelength-tunable lasers. A redundant dictionary is generated from a model for the reflected sensor signal. Imperfect prior knowledge is considered in terms of uncertain local and global parameters. To estimate a sparse representation and the dictionary parameters, we present an alternating minimization algorithm that is equipped with a pre-processing routine to handle dictionary coherence. The support of the obtained sparse signal indicates the reflection delays, which can be used to measure impairments along the sensing fiber. The performance is evaluated by simulations and experimental data for a fiber sensor system with common core architecture.Comment: Accepted for publication in Journal of the Optical Society of America A [ \copyright\ 2017 Optical Society of America.]. One print or electronic copy may be made for personal use only. Systematic reproduction and distribution, duplication of any material in this paper for a fee or for commercial purposes, or modifications of the content of this paper are prohibite

Applied Metaheuristic Computing

For decades, Applied Metaheuristic Computing (AMC) has been a prevailing optimization technique for tackling perplexing engineering and business problems, such as scheduling, routing, ordering, bin packing, assignment, facility layout planning, among others. This is partly because the classic exact methods are constrained with prior assumptions, and partly due to the heuristics being problem-dependent and lacking generalization. AMC, on the contrary, guides the course of low-level heuristics to search beyond the local optimality, which impairs the capability of traditional computation methods. This topic series has collected quality papers proposing cutting-edge methodology and innovative applications which drive the advances of AMC

Novel Inverse-Scattering Methods in Banach Spaces

The scientific community is presently strongly interested in the research of new microwave imaging methods, in order to develop reliable, safe, portable, and cost-effective tools for the non-invasive/non-destructive diagnostic in many fields (such as medicine, civil and industrial engineering, \u2026). In this framework, microwave imaging techniques addressing the full three-dimensional nature of the inspected bodies are still very challenging, since they need to cope with significant computational complexity. Moreover, non-linearity and ill-posedness issues, which usually affects the related inverse scattering problems, need to be faced, too. Another promising topic is the development of phaseless methods, in which only the amplitude of the electric field is assumed to be measurable. This leads to a significant complexity reduction and lower cost for the experimental apparatuses, but the missing information on the phase of the electric field samples exacerbates the ill-posedness problems. In the present Thesis, a novel inexact-Newton inversion algorithm is proposed, in which the iteratively linearized problems are solved in a regularized sense by using a truncated Landweber or a conjugate gradient method developed in the framework of the l^p Banach spaces. This is an improvement that allows to generalize the classic framework of the l^2 Hilbert spaces in which the inexact-Newton approaches are usually defined. The applicability of the proposed imaging method in both the 3D full-vector and 2D phaseless scenarios at microwave frequencies is assessed in this Thesis, and an extensive validation of the proposed imaging method against both synthetic and experimental data is presented, highlighting the advantages over the inexact-Newton scheme developed in the classic framework of the l^2 Hilbert spaces