22,743 research outputs found
A Multi-Code Analysis Toolkit for Astrophysical Simulation Data
The analysis of complex multiphysics astrophysical simulations presents a
unique and rapidly growing set of challenges: reproducibility, parallelization,
and vast increases in data size and complexity chief among them. In order to
meet these challenges, and in order to open up new avenues for collaboration
between users of multiple simulation platforms, we present yt (available at
http://yt.enzotools.org/), an open source, community-developed astrophysical
analysis and visualization toolkit. Analysis and visualization with yt are
oriented around physically relevant quantities rather than quantities native to
astrophysical simulation codes. While originally designed for handling Enzo's
structure adaptive mesh refinement (AMR) data, yt has been extended to work
with several different simulation methods and simulation codes including Orion,
RAMSES, and FLASH. We report on its methods for reading, handling, and
visualizing data, including projections, multivariate volume rendering,
multi-dimensional histograms, halo finding, light cone generation and
topologically-connected isocontour identification. Furthermore, we discuss the
underlying algorithms yt uses for processing and visualizing data, and its
mechanisms for parallelization of analysis tasks.Comment: 18 pages, 6 figures, emulateapj format. Resubmitted to Astrophysical
Journal Supplement Series with revisions from referee. yt can be found at
http://yt.enzotools.org
Task-based adaptive multiresolution for time-space multi-scale reaction-diffusion systems on multi-core architectures
A new solver featuring time-space adaptation and error control has been
recently introduced to tackle the numerical solution of stiff
reaction-diffusion systems. Based on operator splitting, finite volume adaptive
multiresolution and high order time integrators with specific stability
properties for each operator, this strategy yields high computational
efficiency for large multidimensional computations on standard architectures
such as powerful workstations. However, the data structure of the original
implementation, based on trees of pointers, provides limited opportunities for
efficiency enhancements, while posing serious challenges in terms of parallel
programming and load balancing. The present contribution proposes a new
implementation of the whole set of numerical methods including Radau5 and
ROCK4, relying on a fully different data structure together with the use of a
specific library, TBB, for shared-memory, task-based parallelism with
work-stealing. The performance of our implementation is assessed in a series of
test-cases of increasing difficulty in two and three dimensions on multi-core
and many-core architectures, demonstrating high scalability
A Comparison of Two Shallow Water Models with Non-Conforming Adaptive Grids: classical tests
In an effort to study the applicability of adaptive mesh refinement (AMR)
techniques to atmospheric models an interpolation-based spectral element
shallow water model on a cubed-sphere grid is compared to a block-structured
finite volume method in latitude-longitude geometry. Both models utilize a
non-conforming adaptation approach which doubles the resolution at fine-coarse
mesh interfaces. The underlying AMR libraries are quad-tree based and ensure
that neighboring regions can only differ by one refinement level.
The models are compared via selected test cases from a standard test suite
for the shallow water equations. They include the advection of a cosine bell, a
steady-state geostrophic flow, a flow over an idealized mountain and a
Rossby-Haurwitz wave. Both static and dynamics adaptations are evaluated which
reveal the strengths and weaknesses of the AMR techniques. Overall, the AMR
simulations show that both models successfully place static and dynamic
adaptations in local regions without requiring a fine grid in the global
domain. The adaptive grids reliably track features of interests without visible
distortions or noise at mesh interfaces. Simple threshold adaptation criteria
for the geopotential height and the relative vorticity are assessed.Comment: 25 pages, 11 figures, preprin
Achieving Extreme Resolution in Numerical Cosmology Using Adaptive Mesh Refinement: Resolving Primordial Star Formation
As an entry for the 2001 Gordon Bell Award in the "special" category, we
describe our 3-d, hybrid, adaptive mesh refinement (AMR) code, Enzo, designed
for high-resolution, multiphysics, cosmological structure formation
simulations. Our parallel implementation places no limit on the depth or
complexity of the adaptive grid hierarchy, allowing us to achieve unprecedented
spatial and temporal dynamic range. We report on a simulation of primordial
star formation which develops over 8000 subgrids at 34 levels of refinement to
achieve a local refinement of a factor of 10^12 in space and time. This allows
us to resolve the properties of the first stars which form in the universe
assuming standard physics and a standard cosmological model. Achieving extreme
resolution requires the use of 128-bit extended precision arithmetic (EPA) to
accurately specify the subgrid positions. We describe our EPA AMR
implementation on the IBM SP2 Blue Horizon system at the San Diego
Supercomputer Center.Comment: 23 pages, 5 figures. Peer reviewed technical paper accepted to the
proceedings of Supercomputing 2001. This entry was a Gordon Bell Prize
finalist. For more information visit http://www.TomAbel.com/GB
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