Effect of Mixed Precision Computing on H-Matrix Vector Multiplication in BEM Analysis

Hierarchical Matrix (H-matrix) is an approximation technique which splits a target dense matrix into multiple submatrices, and where a selected portion of submatrices are low-rank approximated. The technique substantially reduces both time and space complexity of dense matrix vector multiplication, and hence has been applied to numerous practical problems. In this paper, we aim to accelerate the H-matrix vector multiplication by introducing mixed precision computing, where we employ both binary64 (FP64) and binary32 (FP32) arithmetic operations. We propose three methods to introduce mixed precision computing to H-matrix vector multiplication, and then evaluate them in a boundary element method (BEM) analysis. The numerical tests examine the effects of mixed precision computing, particularly on the required simulation time and rate of convergence of the iterative (BiCG-STAB) linear solver. We confirm the effectiveness of the proposed methods.Comment: Accepted manuscript to International Conference on High Performance Computing in Asia-Pacific Region (HPCAsia2020), January 15--17, 2020, Fukuoka, Japa

Proto-Plasm: parallel language for adaptive and scalable modelling of biosystems

This paper discusses the design goals and the first developments of Proto-Plasm, a novel computational environment to produce libraries of executable, combinable and customizable computer models of natural and synthetic biosystems, aiming to provide a supporting framework for predictive understanding of structure and behaviour through multiscale geometric modelling and multiphysics simulations. Admittedly, the Proto-Plasm platform is still in its infancy. Its computational framework—language, model library, integrated development environment and parallel engine—intends to provide patient-specific computational modelling and simulation of organs and biosystem, exploiting novel functionalities resulting from the symbolic combination of parametrized models of parts at various scales. Proto-Plasm may define the model equations, but it is currently focused on the symbolic description of model geometry and on the parallel support of simulations. Conversely, CellML and SBML could be viewed as defining the behavioural functions (the model equations) to be used within a Proto-Plasm program. Here we exemplify the basic functionalities of Proto-Plasm, by constructing a schematic heart model. We also discuss multiscale issues with reference to the geometric and physical modelling of neuromuscular junctions

A Large Scale Inertial Aided Visual Simultaneous Localization And Mapping (SLAM) System For Small Mobile Platforms

In this dissertation we present a robust simultaneous mapping and localization scheme that can be deployed on a computationally limited, small unmanned aerial system. This is achieved by developing a key frame based algorithm that leverages the multiprocessing capacity of modern low power mobile processors. The novelty of the algorithm lies in the design to make it robust against rapid exploration while keeping the computational time to a minimum. A novel algorithm is developed where the time critical components of the localization and mapping system are computed in parallel utilizing the multiple cores of the processor. The algorithm uses a scale and rotation invariant state of the art binary descriptor for landmark description making it suitable for compact large scale map representation and robust tracking. This descriptor is also used in loop closure detection making the algorithm efficient by eliminating any need for separate descriptors in a Bag of Words scheme. Effectiveness of the algorithm is demonstrated by performance evaluation in indoor and large scale outdoor dataset. We demonstrate the efficiency and robustness of the algorithm by successful six degree of freedom (6 DOF) pose estimation in challenging indoor and outdoor environment. Performance of the algorithm is validated on a quadcopter with onboard computation

A Finite Element Framework for Multiscale/Multiphysics Analysis of Structures with Complex Microstructures

This research work has contributed in various ways to help develop a better understanding of textile composites and materials with complex microstructures in general. An instrumental part of this work was the development of an object-oriented framework that made it convenient to perform multiscale/multiphysics analyses of advanced materials with complex microstructures such as textile composites. In addition to the studies conducted in this work, this framework lays the groundwork for continued research of these materials. This framework enabled a detailed multiscale stress analysis of a woven DCB specimen that revealed the effect of the complex microstructure on the stress and strain energy release rate distribution along the crack front. In addition to implementing an oxidation model, the framework was also used to implement strategies that expedited the simulation of oxidation in textile composites so that it would take only a few hours. The simulation showed that the tow architecture played a significant role in the oxidation behavior in textile composites. Finally, a coupled diffusion/oxidation and damage progression analysis was implemented that was used to study the mechanical behavior of textile composites under mechanical loading as well as oxidation. A parametric study was performed to determine the effect of material properties and the number of plies in the laminate on its mechanical behavior. The analyses indicated a significant effect of the tow architecture and other parameters on the damage progression in the laminates

Fraud detection and link analysis in Genertel\u2019s customer network

This thesis describes the development of a fraud detection scheme for car insurance customers, based only on information that is available at the moment of underwriting. It explains how we manipulated raw anonymised data and turned it into a graph, and how we used this graph to assign a fraudulence score to each node. Finally, it evaluates the performance of this score in identifying unknown fraudsters. The results obtained in the thesis have been obtained by means of several ad hoc optimised and parallel algorithms, which have been tested and run on multiple HPC platforms

Application of HPC in eddy current electromagnetic problem solution

As engineering problems are becoming more and more advanced, the size of an average model solved by partial differential equations is rapidly growing and, in order to keep simulation times within reasonable bounds, both faster computers and more efficient software implementations are needed. In the first part of this thesis, the full potential of simulation software has been exploited through high performance parallel computing techniques. In particular, the simulation of induction heating processes is accomplished within reasonable solution times, by implementing different parallel direct solvers for large sparse linear system, in the solution process of a commercial software. The performance of such library on shared memory systems has been remarkably improved by implementing a multithreaded version of MUMPS (MUltifrontal Massively Parallel Solver) library, which have been tested on benchmark matrices arising from typical induction heating process simulations. A new multithreading approach and a low rank approximation technique have been implemented and developed by MUMPS team in Lyon and Toulouse. In the context of a collaboration between MUMPS team and DII-University of Padova, a preliminary version of such functionalities could be tested on induction heating benchmark problems, and a substantial reduction of the computational cost and memory requirements could be achieved. In the second part of this thesis, some examples of design methodology by virtual prototyping have been described. Complex multiphysics simulations involving electromagnetic, circuital, thermal and mechanical problems have been performed by exploiting parallel solvers, as developed in the first part of this thesis. Finally, multiobjective stochastic optimization algorithms have been applied to multiphysics 3D model simulations in search of a set of improved induction heating device configurations

Solution of partial differential equations on vector and parallel computers

The present status of numerical methods for partial differential equations on vector and parallel computers was reviewed. The relevant aspects of these computers are discussed and a brief review of their development is included, with particular attention paid to those characteristics that influence algorithm selection. Both direct and iterative methods are given for elliptic equations as well as explicit and implicit methods for initial boundary value problems. The intent is to point out attractive methods as well as areas where this class of computer architecture cannot be fully utilized because of either hardware restrictions or the lack of adequate algorithms. Application areas utilizing these computers are briefly discussed