Improving the scalability of parallel N-body applications with an event driven constraint based execution model

The scalability and efficiency of graph applications are significantly constrained by conventional systems and their supporting programming models. Technology trends like multicore, manycore, and heterogeneous system architectures are introducing further challenges and possibilities for emerging application domains such as graph applications. This paper explores the space of effective parallel execution of ephemeral graphs that are dynamically generated using the Barnes-Hut algorithm to exemplify dynamic workloads. The workloads are expressed using the semantics of an Exascale computing execution model called ParalleX. For comparison, results using conventional execution model semantics are also presented. We find improved load balancing during runtime and automatic parallelism discovery improving efficiency using the advanced semantics for Exascale computing.Comment: 11 figure

PARALLEX FILE SYSTEM (PXFS): BRIDGING THE GAP BETWEEN EXASCALE PROCESSING CAPABILITIES AND I/O PERFORMANCE

Due to processors reaching the maximum performance allowable by current technology, architectural trends for computer systems continue to increase the number of cores per processing chip to maximize system performance. Most estimates suggest massively parallel systems will be available within the decade, containing millions of cores and capable of exaFlops of performance. New models of execution are necessary to maximize processor utilization and minimize power costs for these exascale systems. ParalleX is one such execution model, which attempts to address inefficiencies of current execution models by exposing fine-grained parallelism, increasing system utilization using asynchronous workflow, and resolving resource contention through the use of adaptive and dynamic resource scheduling. A particularly important aspect of these exascale execution models is the design of the I/O subsystem, which has seen limited performance increases compared to processor and network technologies. Parallel file systems have been designed to help alleviate the poor performance of storage technologies by distributing file data across multiple nodes of a parallel system to maximize the aggregate throughput attainable by file system clients. However, the design of parallel file systems needs to be modified to explicitly address the inherent high-latency of remote file system operations without degrading file system performance and scalability. We present modifications to OrangeFS, a high-performance, working model parallel file system geared towards the facilitation of research in the field of parallel I/O, to help address the inefficiencies of current file systems. We deem our resultant parallel file system implementation ParalleX File System (PXFS), as it attempts to support the features required by the I/O subsystem of the ParalleX execution model. Specifically, PXFS offers mechanisms for masking the latency of file system operations, defining meaningful computation to be overlapped with file system communication, and maintaining the high-performance and scalability exhibited by OrangeFS. Our results indicate PXFS successfully improves file system performance and supports the semantics of ParalleX with limited programmer intervention, potentially simplifying the design and increasing the performance of many ParalleX applications

A Persistent Storage Model for Extreme Computing

The continuing technological progress resulted in a dramatic growth in aggregate computational performance of the largest supercomputing systems. Unfortunately, these advances did not translate to the required extent into accompanying I/O systems and little more in terms of architecture or effective access latency. New classes of algorithms developed for massively parallel applications, that gracefully handle the challenges of asynchrony, heavily multi-threaded distributed codes, and message-driven computation, must be matched by similar advances in I/O methods and algorithms to produce a well performing and balanced supercomputing system. This dissertation proposes PXFS, a storage model for persistent objects inspired by the ParalleX model of execution that addresses many of these challenges. The PXFS model is designed to be asynchronous in nature to comply with ParalleX model and proposes an active TupleSpace concept to hold all kinds of metadata/meta-object for either storage objects or runtime objects. The new active TupleSpace can also register ParalleX actions to be triggered under certain tuple operations. An first implementation of PXFS utilizing a well-known Orange parallel file system as its back-end via asynchronous I/O layer and the implementation of TupleSpace component in HPX, the implementation of ParalleX. These details are also described along with the preliminary performance data. A house-made micro benchmark is developed to measure the disk I/O throughput of the PXFS asynchronous interface. The results show perfect scalability and 3x to 20x times speedup of I/O throughput performance comparing to OrangeFS synchronous user interface. Use cases of TupleSpace components are discussed for real-world applications including micro check-pointing. By utilizing TupleSpace in HPX applications for I/O, global barrier can be replaced with fine-grained parallelism to overlap more computation with communication and greatly boost the performance and efficiency. Also the dissertation showcases the distributed directory service in Orange file system which process directory entries in parallel and effectively improves the directory metada operations

Extreme scale parallel NBody algorithm with event driven constraint based execution model

Traditional scientific applications such as Computational Fluid Dynamics, Partial Differential Equations based numerical methods (like Finite Difference Methods, Finite Element Methods) achieve sufficient efficiency on state of the art high performance computing systems and have been widely studied / implemented using conventional programming models. For emerging application domains such as Graph applications scalability and efficiency is significantly constrained by the conventional systems and their supporting programming models. Furthermore technology trends like multicore, manycore, heterogeneous system architectures are introducing new challenges and possibilities. Emerging technologies are requiring a rethinking of approaches to more effectively expose the underlying parallelism to the applications and the end-users. This thesis explores the space of effective parallel execution of ephemeral graphs that are dynamically generated. The standard particle based simulation, solved using the Barnes-Hut algorithm is chosen to exemplify the dynamic workloads. In this thesis the workloads are expressed using sequential execution semantics, a conventional parallel programming model - shared memory semantics and semantics of an innovative execution model designed for efficient scalable performance towards Exascale computing called ParalleX. The main outcomes of this research are parallel processing of dynamic ephemeral workloads, enabling dynamic load balancing during runtime, and using advanced semantics for exposing parallelism in scaling constrained applications

Advanced semantics for accelerated graph processing

Large-scale graph applications are of great national, commercial, and societal importance, with direct use in fields such as counter-intelligence, proteomics, and data mining. Unfortunately, graph-based problems exhibit certain basic characteristics that make them a poor match for conventional computing systems in terms of structure, scale, and semantics. Graph processing kernels emphasize sparse data structures and computations with irregular memory access patterns that destroy the temporal and spatial locality upon which modern processors rely for performance. Furthermore, applications in this area utilize large data sets, and have been shown to be more data intensive than typical floating-point applications, two properties that lead to inefficient utilization of the hierarchical memory system. Current approaches to processing large graph data sets leverage traditional HPC systems and programming models, for shared memory and message-passing computation, and are thus limited in efficiency, scalability, and programmability. The research presented in this thesis investigates the potential of a new model of execution that is hypothesized as a promising alternative for graph-based applications to conventional practices. A new approach to graph processing is developed and presented in this thesis. The application of the experimental ParalleX execution model to graph processing balances continuation-migration style fine-grain concurrency with constraint-based synchronization through embedded futures. A collection of parallel graph application kernels provide experiment control drivers for analysis and evaluation of this innovative strategy. Finally, an experimental software library for scalable graph processing, the ParalleX Graph Library, is defined using the HPX runtime system, providing an implementation of the key concepts and a framework for development of ParalleX-based graph applications