Dynamic management zones for irrigation scheduling

Irrigation scheduling decision-support tools can improve water use efficiency by matching irrigation recommendations to prevailing soil and crop conditions within a season. Yet, little research is available on how to support real-time precision irrigation that varies within-season in both time and space. We investigate the integration of remotely sensed NDVI time-series, soil moisture sensor measurements, and root zone simulation forecasts for in-season delineation of dynamic management zones (MZ) and for a variable rate irrigation scheduling in order to improve irrigation scheduling and crop performance. Delineation of MZ was conducted in a 5.8-ha maize field during 2018 using Sentinel-2 NDVI time-series and an unsupervised classification. The number and spatial extent of MZs changed through the growing season. A network of soil moisture sensors was used to interpret spatiotemporal changes of the NDVI. Soil water content was a significant contributor to changes in crop vigor across MZs through the growing season. Real-time cluster validity function analysis provided in-season evaluation of the MZ design. For example, the total within-MZ daily soil moisture relative variance decreased from 85% (early vegetative stages) to below 25% (late reproductive stages). Finally, using the Hydrus-1D model, a workflow for in-season optimization of irrigation scheduling and water delivery management was tested. Data simulations indicated that crop transpiration could be optimized while reducing water applications between 11 and 28.5% across the dynamic MZs. The proposed integration of spatiotemporal crop and soil moisture data can be used to support management decisions to effectively control outputs of crop × environment × management interactions.Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture. This study was supported by the European Commission Horizon 2020 Programme for Research and Innovation (H2020) in the context of the Marie Sklodowska-Curie Research and Innovation Staff Exchange (RISE) action (ACCWA project, grant agreement no.: 823965). This study was also funded by the project ‘Low Input Sustainable Agriculture (LISA)’ under the Operational program FEDER for Catalonia 2014‐2020 RIS3CAT (http://www.lisaproject.cat/introduction/).Peer ReviewedPostprint (author's final draft

A segmentation approach to delineate zones for differential nitrogen intervention.

Multi-source and -temporal data integration is expected to support the delineation of within-field management zones that may better conform to unique combinations of crop yield variations. This work addresses the evaluation of zone delineation approaches based on image classification and segmentation methods. An object based segmentation is introduced using ancillary data from multivariate analysis of yield maps. A simple economic evaluation is conducted to compare delineation methods aiming variable-rate Nitrogen applications. Advantages and penalties are suggested for 2, 3, and 4 management zones. Results show that a procedure combining multiresolution, watershed and region grow segmentation algorithms has systematically resulted in greater net worth. It is suggested that segmentation methods have potential application for zone management delineations supporting contiguous patter

A site-specific and dynamic modeling system for zoning and optimizing variable rate irrigation in cotton

Cotton irrigation has been rapidly expanding in west Tennessee during the past decade. Variable rate irrigation is expected to enhance water use efficiency and crop yield in this region due to the significant field-scale soil spatial heterogeneity. A detailed understanding of the soil available water content within the effective root zone is needed to optimally schedule irrigation. In addition, site-specific crop-yield mathematical relationships should be established to identify optimum irrigation management. This study aimed to design and evaluate a site-specific modeling system for zoning and optimizing variable rate irrigation in cotton. The specific objectives of this study were to investigate (i) the spatial variability of soil attributes at the field-scale, (ii) site-specific cotton lint yieldwater relationships across all soil types, and (iii) multiple zoning strategies for variable rate irrigation scenarios. The field (73 ha) was sampled and apparent soil electrical conductivity (ECa) was measured. Landsat 8 satellite data was acquired, processed, and transformed to compare indicators of vegetation and soil response to cotton lint yields, variable irrigation rates, and the spatial variability of soil attributes. Multiple modeling scenarios were developed and examined. Although experiments were performed during two wet years, supplemental irrigation enhanced cotton yield across all soil types in comparison with rain-fed conditions. However, length of cropping season and rainfall distribution remarkably affected cotton response to supplemental irrigation. Geostatistical analysis showed spatial variability in soil textural components and water content was significant and correlated to yield patterns. There was as high as four-fold difference between available water content between coarse-textured and fine-textured soils on the study site. A good agreement was observed (RMSE = 0.052 cm3 cm-3 [cubic centimeter per cubic centimeter] and r = 0.88) between predicted and observed water contents. ECa and space images were useful proximal data to investigate soil spatial variability. The site-specific water production functions performed well at predicting cotton lint yield with RMSE equal to 0.131 Mg ha-1 [megagram per hectare] and 0.194 Mg ha-1 in 2013 and 2014, respectively. The findings revealed that variable rate irrigation with pie shape zones could enhance cotton lint yield under supplemental irrigation in west Tennessee

Weight of evidence to assess sediment quality

Estuaries are perhaps the most threatened environments in the coastal fringe; the coincidence of high natural value and attractiveness for human use has led to conflicts between conservation and development. These conflicts occur in the Sado Estuary since its location is near the industrialised zone of Peninsula of Setúbal and at the same time, a great part of the Estuary is classified as a Natural Reserve due to its high biodiversity. These facts led us to the need of implementing a model of environmental management and quality assessment, based on methodologies that enable the assessment of the Sado Estuary quality and evaluation of the human pressures in the estuary. These methodologies are based on indicators that can better depict the state of the environment and not necessarily all that could be measured or analysed. Sediments have always been considered as an important temporary source of some compounds or a sink for other type of materials or an interface where a great diversity of biogeochemical transformations occur. For all this they are of great importance in the formulation of coastal management system. Many authors have been using sediments to monitor aquatic contamination, showing great advantages when compared to the sampling of the traditional water column. The main objective of this thesis was to develop an estuary environmental management framework applied to Sado Estuary using the DPSIR Model (EMMSado), including data collection, data processing and data analysis. The support infrastructure of EMMSado were a set of spatially contiguous and homogeneous regions of sediment structure (management units). The environmental quality of the estuary was assessed through the sediment quality assessment and integrated in a preliminary stage with the human pressure for development. Besides the earlier explained advantages, studying the quality of the estuary mainly based on the indicators and indexes of the sediment compartment also turns this methodology easier, faster and human and financial resource saving. These are essential factors to an efficient environmental management of coastal areas. Data management, visualization, processing and analysis was obtained through the combined use of indicators and indices, sampling optimization techniques, Geographical Information Systems, remote sensing, statistics for spatial data, Global Positioning Systems and best expert judgments. As a global conclusion, from the nineteen management units delineated and analyzed three showed no ecological risk (18.5 % of the study area). The areas of more concern (5.6 % of the study area) are located in the North Channel and are under strong human pressure mainly due to industrial activities. These areas have also low hydrodynamics and are, thus associated with high levels of deposition. In particular the areas near Lisnave and Eurominas industries can also accumulate the contamination coming from Águas de Moura Channel, since particles coming from that channel can settle down in that area due to residual flow. In these areas the contaminants of concern, from those analyzed, are the heavy metals and metalloids (Cd, Cu, Zn and As exceeded the PEL guidelines) and the pesticides BHC isomers, heptachlor, isodrin, DDT and metabolits, endosulfan and endrin. In the remain management units (76 % of the study area) there is a moderate impact potential of occurrence of adverse ecological effects and in some of these areas no stress agents could be identified. This emphasizes the need for further research, since unmeasured chemicals may be causing or contributing to these adverse effects. Special attention must be taken to the units with moderate impact potential of occurrence of adverse ecological effects, located inside the natural reserve. Non-point source pollution coming from agriculture and aquaculture activities also seem to contribute with important pollution load into the estuary entering from Águas de Moura Channel. This pressure is expressed in a moderate impact potential for ecological risk existent in the areas near the entrance of this Channel. Pressures may also came from Alcácer Channel although they were not quantified in this study. The management framework presented here, including all the methodological tools may be applied and tested in other estuarine ecosystems, which will also allow a comparison between estuarine ecosystems in other parts of the globe

Assessing spatial variability of soil and drawing location-specific management zones for coastal saline soils in Ramanathapuram District, Tamil Nadu

The production of crops in saline and alkali-degraded areas is difficult due to the heterogeneous and spatial variation of soil fertility.  First, their spatial variability was analyzed and maps of the spatial distribution were created using Geostatistical techniques.  The fuzzy k-mean clustering analysis was then used to define Management zones in the coastal saline soils of Ramanathapuram district in Tamil Nadu.  One hundred and fifty geo-referenced soil samples  (30 cm depth) were taken and analyzed for pH, electrical conductivity (ECe) in the saturated paste extract (USSL method), organic carbon (OC) (Walkley-Black chromic acid wet oxidation method), calcium carbonate (CaCO3) (Rapid titration method) and available phosphorus and extractable micronutrients (Multinutrients extraction method), revealing significant variation in soil characteristics throughout the coastal saline soils of Ramanathapuram district.  The most significant factors, which together accounted for four principal components and 69% of the overall variability, were pH, electrical conductivity (ECe), calcium Carbonate and available zinc.  According to Geostatistical analysis, the Exponential (pH, OC (organic carbon), P, Fe, Mn and Zn) and Stable (ECe) was the best fit semivariogram ordinary kriging model with weak to moderate spatial dependence.  Fuzzy k-mean clustering was also used to identify zone 1, zone 2 and zone 3.  For every soil property, there was a significant difference between MZ1(zone 1), MZ2(zone 2) and MZ3(zone 3).  These results also showed that cluster analysis gave farmers a chance to use location-specific nutrient management strategies by minimizing variability within the zone. The management zones can decrease agricultural inputs and environmental pollutants while increasing crop productivity.

Validation of Rapid and Low-Cost Approach for the Delineation of Zone Management Based on Machine Learning Algorithms

none7noProximal soil sensors are receiving strong attention from several disciplinary fields, and this has led to a rise in their availability in the market in the last two decades. The aim of this work was to validate agronomically a zone management delineation procedure from electromagnetic induction (EMI) maps applied to two different rainfed durum wheat fields. The k-means algorithm was applied based on the gap statistic index for the identification of the optimal number of management zones and their positions. Traditional statistical analysis was performed to detect significant differences in soil characteristics and crop response of each management zones. The procedure showed the presence of two management zones at both two sites under analysis, and it was agronomically validated by the significant difference in soil texture (+24.17%), bulk density (+6.46%), organic matter (+39.29%), organic carbon (+39.4%), total carbonates (+25.34%), total nitrogen (+30.14%), protein (+1.50%) and yield data (+1.07 t ha−1 ). Moreover, six unmanned aerial vehicle (UAV) flight missions were performed to investigate the relationship between five vegetation indexes and the EMI maps. The results suggest performing the multispectral images acquisition during the flowering phenological stages to attribute the crop spatial variability to different soil proprieties.openDenora M.; Fiorentini M.; Zenobi S.; Deligios P.A.; Orsini R.; Ledda L.; Perniola M.Denora, M.; Fiorentini, M.; Zenobi, S.; Deligios, P. A.; Orsini, R.; Ledda, L.; Perniola, M

FINE SCALE MAPPING OF LAURENTIAN MIXED FOREST NATURAL HABITAT COMMUNITIES USING MULTISPECTRAL NAIP AND UAV DATASETS COMBINED WITH MACHINE LEARNING METHODS

Natural habitat communities are an important element of any forest ecosystem. Mapping and monitoring Laurentian Mixed Forest natural communities using high spatial resolution imagery is vital for management and conservation purposes. This study developed integrated spatial, spectral and Machine Learning (ML) approaches for mapping complex vegetation communities. The study utilized ultra-high and high spatial resolution National Agriculture Imagery Program (NAIP) and Unmanned Aerial Vehicle (UAV) datasets, and Digital Elevation Model (DEM). Complex natural vegetation community habitats in the Laurentian Mixed Forest of the Upper Midwest. A detailed workflow is presented to effectively process UAV imageries in a dense forest environment where the acquisition of ground control points (GCPs) is extremely difficult. Statistical feature selection methods such as Joint Mutual Information Maximization (JMIM) which is not that widely used in the natural resource field and variable importance (varImp) were used to discriminate spectrally similar habitat communities. A comprehensive approach to training set delineation was implemented including the use of Principal Components Analysis (PCA), Independent Components Analysis (ICA), soils data, and expert image interpretation. The developed approach resulted in robust training sets to delineate and accurately map natural community habitats. Three ML algorithms were implemented Random Forest (RF), Support Vector Machine (SVM), and Averaged Neural Network (avNNet). RF outperformed SVM and avNNet. Overall RF accuracies across the three study sites ranged from 79.45-87.74% for NAIP and 87.31-93.74% for the UAV datasets. Different ancillary datasets including spectral enhancement and image transformation techniques (PCA and ICA), GLCM-Texture, spectral indices, and topography features (elevation, slope, and aspect) were evaluated using the JMIM and varImp feature selection methods, overall accuracy assessment, and kappa calculations. The robustness of the workflow was evaluated with three study sites which are geomorphologically unique and contain different natural habitat communities. This integrated approach is recommended for accurate natural habitat community classification in ecologically complex landscapes

3D fusion of histology to multi-parametric MRI for prostate cancer imaging evaluation and lesion-targeted treatment planning

Multi-parametric magnetic resonance imaging (mpMRI) of localized prostate cancer has the potential to support detection, staging and localization of tumors, as well as selection, delivery and monitoring of treatments. Delineating prostate cancer tumors on imaging could potentially further support the clinical workflow by enabling precise monitoring of tumor burden in active-surveillance patients, optimized targeting of image-guided biopsies, and targeted delivery of treatments to decrease morbidity and improve outcomes. Evaluating the performance of mpMRI for prostate cancer imaging and delineation ideally includes comparison to an accurately registered reference standard, such as prostatectomy histology, for the locations of tumor boundaries on mpMRI. There are key gaps in knowledge regarding how to accurately register histological reference standards to imaging, and consequently further gaps in knowledge regarding the suitability of mpMRI for tasks, such as tumor delineation, that require such reference standards for evaluation. To obtain an understanding of the magnitude of the mpMRI-histology registration problem, we quantified the position, orientation and deformation of whole-mount histology sections relative to the formalin-fixed tissue slices from which they were cut. We found that (1) modeling isotropic scaling accounted for the majority of the deformation with a further small but statistically significant improvement from modeling affine transformation, and (2) due to the depth (mean±standard deviation (SD) 1.1±0.4 mm) and orientation (mean±SD 1.5±0.9°) of the sectioning, the assumption that histology sections are cut from the front faces of tissue slices, common in previous approaches, introduced a mean error of 0.7 mm. To determine the potential consequences of seemingly small registration errors such as described above, we investigated the impact of registration accuracy on the statistical power of imaging validation studies using a co-registered spatial reference standard (e.g. histology images) by deriving novel statistical power formulae that incorporate registration error. We illustrated, through a case study modeled on a prostate cancer imaging trial at our centre, that submillimeter differences in registration error can have a substantial impact on the required sample sizes (and therefore also the study cost) for studies aiming to detect mpMRI signal differences due to 0.5 – 2.0 cm3 prostate tumors. With the aim of achieving highly accurate mpMRI-histology registrations without disrupting the clinical pathology workflow, we developed a three-stage method for accurately registering 2D whole-mount histology images to pre-prostatectomy mpMRI that allowed flexible placement of cuts during slicing for pathology and avoided the assumption that histology sections are cut from the front faces of tissue slices. The method comprised a 3D reconstruction of histology images, followed by 3D–3D ex vivo–in vivo and in vivo–in vivo image transformations. The 3D reconstruction method minimized fiducial registration error between cross-sections of non-disruptive histology- and ex-vivo-MRI-visible strand-shaped fiducials to reconstruct histology images into the coordinate system of an ex vivo MR image. We quantified the mean±standard deviation target registration error of the reconstruction to be 0.7±0.4 mm, based on the post-reconstruction misalignment of intrinsic landmark pairs. We also compared our fiducial-based reconstruction to an alternative reconstruction based on mutual-information-based registration, an established method for multi-modality registration. We found that the mean target registration error for the fiducial-based method (0.7 mm) was lower than that for the mutual-information-based method (1.2 mm), and that the mutual-information-based method was less robust to initialization error due to multiple sources of error, including the optimizer and the mutual information similarity metric. The second stage of the histology–mpMRI registration used interactively defined 3D–3D deformable thin-plate-spline transformations to align ex vivo to in vivo MR images to compensate for deformation due to endorectal MR coil positioning, surgical resection and formalin fixation. The third stage used interactively defined 3D–3D rigid or thin-plate-spline transformations to co-register in vivo mpMRI images to compensate for patient motion and image distortion. The combined mean registration error of the histology–mpMRI registration was quantified to be 2 mm using manually identified intrinsic landmark pairs. Our data set, comprising mpMRI, target volumes contoured by four observers and co-registered contoured and graded histology images, was used to quantify the positive predictive values and variability of observer scoring of lesions following the Prostate Imaging Reporting and Data System (PI-RADS) guidelines, the variability of target volume contouring, and appropriate expansion margins from target volumes to achieve coverage of histologically defined cancer. The analysis of lesion scoring showed that a PI-RADS overall cancer likelihood of 5, denoting “highly likely cancer”, had a positive predictive value of 85% for Gleason 7 cancer (and 93% for lesions with volumes \u3e0.5 cm3 measured on mpMRI) and that PI-RADS scores were positively correlated with histological grade (ρ=0.6). However, the analysis also showed interobserver differences in PI-RADS score of 0.6 to 1.2 (on a 5-point scale) and an agreement kappa value of only 0.30. The analysis of target volume contouring showed that target volume contours with suitable margins can achieve near-complete histological coverage for detected lesions, despite the presence of high interobserver spatial variability in target volumes. Prostate cancer imaging and delineation have the potential to support multiple stages in the management of localized prostate cancer. Targeted biopsy procedures with optimized targeting based on tumor delineation may help distinguish patients who need treatment from those who need active surveillance. Ongoing monitoring of tumor burden based on delineation in patients undergoing active surveillance may help identify those who need to progress to therapy early while the cancer is still curable. Preferentially targeting therapies at delineated target volumes may lower the morbidity associated with aggressive cancer treatment and improve outcomes in low-intermediate-risk patients. Measurements of the accuracy and variability of lesion scoring and target volume contouring on mpMRI will clarify its value in supporting these roles

Satellite on-board processing for earth resources data

Results of a survey of earth resources user applications and their data requirements, earth resources multispectral scanner sensor technology, and preprocessing algorithms for correcting the sensor outputs and for data bulk reduction are presented along with a candidate data format. Computational requirements required to implement the data analysis algorithms are included along with a review of computer architectures and organizations. Computer architectures capable of handling the algorithm computational requirements are suggested and the environmental effects of an on-board processor discussed. By relating performance parameters to the system requirements of each of the user requirements the feasibility of on-board processing is determined for each user. A tradeoff analysis is performed to determine the sensitivity of results to each of the system parameters. Significant results and conclusions are discussed, and recommendations are presented

EXPLORING SPATIAL AND TEMPORAL VARIABILITY OF SOIL AND CROP PROCESSES FOR IRRIGATION MANAGEMENT

Irrigation needs to be applied to soils in relatively humid regions such as western Kentucky to supply water for crop uptake to optimize and stabilize yields. Characterization of soil and crop variability at the field scale is needed to apply site specific management and to optimize water application. The objective of this work is to propose a characterization and modeling of soil and crop processes to improve irrigation management. Through an analysis of spatial and temporal behavior of soil and crop variables the variability in the field was identified. Integrative analysis of soil, crop, proximal and remote sensing data was utilized. A set of direct and indirect measurements that included soil texture, electrical conductivity (EC), soil chemical properties (pH, organic matter, N, P, K, Ca, Mg and Zn), NDVI, topographic variables, were measured in a silty loam soil near Princeton, Kentucky. Maps of measured properties were developed using kriging, and cokriging. Different approaches and two cluster methods (FANNY and CLARA) with selected variables were applied to identify management zones. Optimal scenarios were achieved with dividing the entire field into 2 or 3 areas. Spatial variability in the field is strongly influenced by topography and clay content. Using Root Zone Water Quality Model 2.0 (RZWQM), soil water tension was modeled and predicted at different zones based on the previous delineated zones. Soil water tension was measured at three depths (20, 40 and 60 cm) during different seasons (20016 and 2017) under wheat and corn. Temporal variations in soil water were driven mainly by precipitation but the behavior is different among management zones. The zone with higher clay content tends to dry out faster between rainfall events and reveals higher fluctuations in water tension even at greater depth. The other zones are more stable at the lower depth and share more similarities in their cyclic patterns. The model predictions were satisfactory in the surface layer but the accuracy decreased in deeper layers. A study of clay mineralogy was performed to explore field spatial differences based on the map classification. kaolinite, vermiculite, HIV and smectite are among the identified minerals. The clayey area presents higher quantity of some of the clay minerals. All these results show the ability to identify and characterize the field spatial variability, combining easily obtainable data under realistic farm conditions. This information can be utilized to manage resources more effectively through site specific application