Mixing multi-core CPUs and GPUs for scientific simulation software

Recent technological and economic developments have led to widespread availability of multi-core CPUs and specialist accelerator processors such as graphical processing units (GPUs). The accelerated computational performance possible from these devices can be very high for some applications paradigms. Software languages and systems such as NVIDIA's CUDA and Khronos consortium's open compute language (OpenCL) support a number of individual parallel application programming paradigms. To scale up the performance of some complex systems simulations, a hybrid of multi-core CPUs for coarse-grained parallelism and very many core GPUs for data parallelism is necessary. We describe our use of hybrid applica- tions using threading approaches and multi-core CPUs to control independent GPU devices. We present speed-up data and discuss multi-threading software issues for the applications level programmer and o er some suggested areas for language development and integration between coarse-grained and ne-grained multi-thread systems. We discuss results from three common simulation algorithmic areas including: partial di erential equations; graph cluster metric calculations and random number generation. We report on programming experiences and selected performance for these algorithms on: single and multiple GPUs; multi-core CPUs; a CellBE; and using OpenCL. We discuss programmer usability issues and the outlook and trends in multi-core programming for scienti c applications developers

Cache affinity optimization techniques for scaling software transactional memory systems on multi-CMP architectures

Software transactional memory (STM) enhances both ease-of-use and concurrency, and is considered one of the next-generation paradigms for parallel programming. Application programs may see hotspots where data conflicts are intensive and seriously degrade the performance. So advanced STM systems employ dynamic concurrency control techniques to curb the conflict rate through properly throttling the rate of spawning transactions. High-end computers may have two or more multicore processors so that data sharing among cores goes through a non-uniform cache memory hierarchy. This poses challenges to concurrency control designs as improper metadata placement and sharing will introduce scalability issues to the system. Poor thread-to-core mappings that induce excessive cache invalidation are also detrimental to the overall performance. In this paper, we share our experience in designing and implementing a new dynamic concurrency controller for Tiny STM, which helps keeping the system concurrency at a near-optimal level. By decoupling unfavourable metadata sharing, our controller design avoids costly inter-processor communications. It also features an affinity-aware thread migration technique that fine-tunes thread placements by observing inter-thread transactional conflicts. We evaluate our implementation using the STAMP benchmark suite and show that the controller can bring around 21% average speedup over the baseline execution. © 2015 IEEE.postprin

A scalable architecture for ordered parallelism

We present Swarm, a novel architecture that exploits ordered irregular parallelism, which is abundant but hard to mine with current software and hardware techniques. In this architecture, programs consist of short tasks with programmer-specified timestamps. Swarm executes tasks speculatively and out of order, and efficiently speculates thousands of tasks ahead of the earliest active task to uncover ordered parallelism. Swarm builds on prior TLS and HTM schemes, and contributes several new techniques that allow it to scale to large core counts and speculation windows, including a new execution model, speculation-aware hardware task management, selective aborts, and scalable ordered commits. We evaluate Swarm on graph analytics, simulation, and database benchmarks. At 64 cores, Swarm achieves 51--122× speedups over a single-core system, and out-performs software-only parallel algorithms by 3--18×.National Science Foundation (U.S.) (Award CAREER-145299

From A to E: Analyzing TPC’s OLTP Benchmarks -- The obsolete, the ubiquitous, the unexplored

Introduced in 2007, TPC-E is the most recently standardized OLTP benchmark by TPC. Even though TPC-E has already been around for six years, it has not gained the popularity of its predecessor TPC-C: all the published results for TPC-E use a single database vendor’s product. TPC-E is significantly different than its predecessors. Some of its distinguishing characteristics are the non-uniform input creation, longer-running and more complicated transactions, more difficult partitioning etc. These factors slow down the adoption of TPC-E. In turn, there is little knowledge in the community about how TPC-E behaves micro-architecturally and within the database engine. To shed light on TPC-E, we implement it on top of a scalable open-source database engine, Shore-MT, and perform a workload characterization study, comparing it with the previous, much better known OLTP benchmarks of TPC: TPC-B and TPC-C. In parallel, we study the evolution of the OLTP benchmarks throughout the decades. Our results demonstrate that TPC-E exhibits similar micro-architectural behavior to TPC-B and TPC-C, even though it incurs less stall time and higher instructions per cycle. On the other hand, within the database engine it suffers more from logical lock contention. Therefore, we argue that, on the hardware side, TPC-E needs less aggressive processors. Whereas on the software side it can benefit from designs based on intra-transaction parallelism, logical partitioning, and optimistic concurrency control to minimize the effects of lock contention without introducing distributed transactions

Castell: a heterogeneous cmp architecture scalable to hundreds of processors

Technology improvements and power constrains have taken multicore architectures to dominate microprocessor designs over uniprocessors. At the same time, accelerator based architectures have shown that heterogeneous multicores are very efficient and can provide high throughput for parallel applications, but with a high-programming effort. We propose Castell a scalable chip multiprocessor architecture that can be programmed as uniprocessors, and provides the high throughput of accelerator-based architectures. Castell relies on task-based programming models that simplify software development. These models use a runtime system that dynamically finds, schedules, and adds hardware-specific features to parallel tasks. One of these features is DMA transfers to overlap computation and data movement, which is known as double buffering. This feature allows applications on Castell to tolerate large memory latencies and lets us design the memory system focusing on memory bandwidth. In addition to provide programmability and the design of the memory system, we have used a hierarchical NoC and added a synchronization module. The NoC design distributes memory traffic efficiently to allow the architecture to scale. The synchronization module is a consequence of the large performance degradation of application for large synchronization latencies. Castell is mainly an architecture framework that enables the definition of domain-specific implementations, fine-tuned to a particular problem or application. So far, Castell has been successfully used to propose heterogeneous multicore architectures for scientific kernels, video decoding (using H.264), and protein sequence alignment (using Smith-Waterman and clustalW). It has also been used to explore a number of architecture optimizations such as enhanced DMA controllers, and architecture support for task-based programming models. ii

Unifying Thread-Level Speculation and Transactional Memory

Abstract. The motivation of this work is to ask whether Transactional Memory (TM) and Thread-Level Speculation (TLS), two prominent con-currency paradigms usually considered separately, can be combined into a hybrid approach that extracts untapped parallelism and speed-up from common programs. We show that the answer is positive by describing an algorithm, called TLSTM, that leverages an existing TM with TLS capabilities. We also show that our approach is able to achieve up to a 48 % increase in throughput over the base TM, on read dominated workloads of long transactions in a multi-threaded application, among other results.

Improving the Performance and Endurance of Persistent Memory with Loose-Ordering Consistency

Persistent memory provides high-performance data persistence at main memory. Memory writes need to be performed in strict order to satisfy storage consistency requirements and enable correct recovery from system crashes. Unfortunately, adhering to such a strict order significantly degrades system performance and persistent memory endurance. This paper introduces a new mechanism, Loose-Ordering Consistency (LOC), that satisfies the ordering requirements at significantly lower performance and endurance loss. LOC consists of two key techniques. First, Eager Commit eliminates the need to perform a persistent commit record write within a transaction. We do so by ensuring that we can determine the status of all committed transactions during recovery by storing necessary metadata information statically with blocks of data written to memory. Second, Speculative Persistence relaxes the write ordering between transactions by allowing writes to be speculatively written to persistent memory. A speculative write is made visible to software only after its associated transaction commits. To enable this, our mechanism supports the tracking of committed transaction ID and multi-versioning in the CPU cache. Our evaluations show that LOC reduces the average performance overhead of memory persistence from 66.9% to 34.9% and the memory write traffic overhead from 17.1% to 3.4% on a variety of workloads.Comment: This paper has been accepted by IEEE Transactions on Parallel and Distributed System

Matching non-uniformity for program optimizations on heterogeneous many-core systems

As computing enters an era of heterogeneity and massive parallelism, it exhibits a distinct feature: the deepening non-uniform relations among the computing elements in both hardware and software. Besides traditional non-uniform memory accesses, much deeper non-uniformity shows in a processor, runtime, and application, exemplified by the asymmetric cache sharing, memory coalescing, and thread divergences on multicore and many-core processors. Being oblivious to the non-uniformity, current applications fail to tap into the full potential of modern computing devices.;My research presents a systematic exploration into the emerging property. It examines the existence of such a property in modern computing, its influence on computing efficiency, and the challenges for establishing a non-uniformity--aware paradigm. I propose several techniques to translate the property into efficiency, including data reorganization to eliminate non-coalesced accesses, asynchronous data transformations for locality enhancement and a controllable scheduling for exploiting non-uniformity among thread blocks. The experiments show much promise of these techniques in maximizing computing throughput, especially for programs with complex data access patterns