MulCh: a Multi-layer Channel Router using One, Two, and Three Layer Partitions

Chameleon, a channel router for three layers of interconnect, has been implemented to accept specification of an arbitrary number of layers. Chameleon is based on a strategy of decomposing the multilayer problem into two- and three-layer problems in which one of the layers is reserved primarily for vertical wire runs and the other layer(s) for horizontal runs. In some situations, however, it is advantageous to consider also layers that allow the routing of entire nets, using both horizontal and vertical wires. MulCh is a multilayer channel router that extends the algorithms of Chameleon in this direction. MulCh can route channels with any number of layers and automatically chooses a good assignment of wiring strategies to the different layers. In test cases, MulCh shows significant improvement over Chameleon in terms of channel width, net length, and number of vias

Channel routing: Efficient solutions using neural networks

Neural network architectures are effectively applied to solve the channel routing problem. Algorithms for both two-layer and multilayer channel-width minimization, and constrained via minimization are proposed and implemented. Experimental results show that the proposed channel-width minimization algorithms are much superior in all respects compared to existing algorithms. The optimal two-layer solutions to most of the benchmark problems, not previously obtained, are obtained for the first time, including an optimal solution to the famous Deutch\u27s difficult problem. The optimal solution in four-layers for one of the be lchmark problems, not previously obtained, is obtained for the first time. Both convergence rate and the speed with which the simulations are executed are outstanding. A neural network solution to the constrained via minimization problem is also presented. In addition, a fast and simple linear-time algorithm is presented, possibly for the first time, for coloring of vertices of an interval graph, provided the line intervals are given

Spreading processes in Multilayer Networks

Several systems can be modeled as sets of interconnected networks or networks with multiple types of connections, here generally called multilayer networks. Spreading processes such as information propagation among users of an online social networks, or the diffusion of pathogens among individuals through their contact network, are fundamental phenomena occurring in these networks. However, while information diffusion in single networks has received considerable attention from various disciplines for over a decade, spreading processes in multilayer networks is still a young research area presenting many challenging research issues. In this paper we review the main models, results and applications of multilayer spreading processes and discuss some promising research directions.Comment: 21 pages, 3 figures, 4 table

Optimizing performance and energy efficiency of group communication and internet of things in cognitive radio networks

Data traffic in the wireless networks has grown at an unprecedented rate. While traditional wireless networks follow fixed spectrum assignment, spectrum scarcity problem becomes a major challenge in the next generations of wireless networks. Cognitive radio is a promising candidate technology that can mitigate this critical challenge by allowing dynamic spectrum access and increasing the spectrum utilization. As users and data traffic demands increases, more efficient communication methods to support communication in general, and group communication in particular, are needed. On the other hand, limited battery for the wireless network device in general makes it a bottleneck for enhancing the performance of wireless networks. In this thesis, the problem of optimizing the performance of group communication in CRNs is studied. Moreover, energy efficient and wireless-powered group communication in CRNs are considered. Additionally, a cognitive mobile base station and a cognitive UAV are proposed for the purpose of optimizing energy transfer and data dissemination, respectively. First, a multi-objective optimization for many-to-many communication in CRNs is considered. Given a many-to-many communication request, the goal is to support message routing from each user in the many-to-many group to each other. The objectives are minimizing the delay and the number of used links and maximizing data rate. The network is modeled using a multi-layer hyper graph, and the secondary users\u27 transmission is scheduled after establishing the conflict graph. Due to the difficulty of solving the problem optimally, a modified version of an Ant Colony meta-heuristic algorithm is employed to solve the problem. Additionally, energy efficient multicast communication in CRNs is introduced while considering directional and omnidirectional antennas. The multicast service is supported such that the total energy consumption of data transmission and channel switching is minimized. The optimization problem is formulated as a Mixed Integer Linear Program (MILP), and a heuristic algorithm is proposed to solve the problem in polynomial time. Second, wireless-powered machine-to-machine multicast communication in cellular networks is studied. To incentivize Internet of Things (IoT) devices to participate in forwarding the multicast messages, each IoT device participates in messages forwarding receives Radio Frequency (RF) energy form Energy Transmitters (ET) not less than the amount of energy used for messages forwarding. The objective is to minimize total transferred energy by the ETs. The problem is formulated mathematically as a Mixed Integer Nonlinear Program (MINLP), and a Generalized Bender Decomposition with Successive Convex Programming (GBD-SCP) algorithm is introduced to get an approximate solution since there is no efficient way in general to solve the problem optimally. Moreover, another algorithm, Constraints Decomposition with SCP and Binary Variable Relaxation (CDR), is proposed to get an approximate solution in a more efficient way. On the other hand, a cognitive mobile station base is proposed to transfer data and energy to a group of IoT devices underlying a primary network. Total energy consumed by the cognitive base station in its mobility, data transmission and energy transfer is minimized. Moreover, the cognitive base station adjusts its location and transmission power and transmission schedule such that data and energy demands are supported within a certain tolerable time and the primary users are protected from harmful interference. Finally, we consider a cognitive Unmanned Aerial Vehicle (UAV) to disseminate data to IoT devices. The UAV senses the spectrum and finds an idle channel, then it predicts when the corresponding primary user of the selected channel becomes active based on the elapsed time of the off period. Accordingly, it starts its transmission at the beginning of the next frame right after finding the channel is idle. Moreover, it decides the number of the consecutive transmission slots that it will use such that the number of interfering slots to the corresponding primary user does not exceed a certain threshold. A mathematical problem is formulated to maximize the minimum number of bits received by the IoT devices. A successive convex programming-based algorithm is used to get a solution for the problem in an efficiency way. It is shown that the used algorithm converges to a Kuhn Tucker point

Characterization, design and re-optimization on multi-layer optical networks

L'augment de volum de tràfic IP provocat per l'increment de serveis multimèdia com HDTV o vídeo conferència planteja nous reptes als operadors de xarxa per tal de proveir transmissió de dades eficient. Tot i que les xarxes mallades amb multiplexació per divisió de longitud d'ona (DWDM) suporten connexions òptiques de gran velocitat, aquestes xarxes manquen de flexibilitat per suportar tràfic d’inferior granularitat, fet que provoca un pobre ús d'ample de banda. Per fer front al transport d'aquest tràfic heterogeni, les xarxes multicapa representen la millor solució. Les xarxes òptiques multicapa permeten optimitzar la capacitat mitjançant l'empaquetament de connexions de baixa velocitat dins de connexions òptiques de gran velocitat. Durant aquesta operació, es crea i modifica constantment una topologia virtual dinàmica gràcies al pla de control responsable d’aquestes operacions. Donada aquesta dinamicitat, un ús sub-òptim de recursos pot existir a la xarxa en un moment donat. En aquest context, una re-optimizació periòdica dels recursos utilitzats pot ser aplicada, millorant així l'ús de recursos. Aquesta tesi està dedicada a la caracterització, planificació, i re-optimització de xarxes òptiques multicapa de nova generació des d’un punt de vista unificat incloent optimització als nivells de capa física, capa òptica, capa virtual i pla de control. Concretament s'han desenvolupat models estadístics i de programació matemàtica i meta-heurístiques. Aquest objectiu principal s'ha assolit mitjançant cinc objectius concrets cobrint diversos temes oberts de recerca. En primer lloc, proposem una metodologia estadística per millorar el càlcul del factor Q en problemes d'assignació de ruta i longitud d'ona considerant interaccions físiques (IA-RWA). Amb aquest objectiu, proposem dos models estadístics per computar l'efecte XPM (el coll d'ampolla en termes de computació i complexitat) per problemes IA-RWA, demostrant la precisió d’ambdós models en el càlcul del factor Q en escenaris reals de tràfic. En segon lloc i fixant-nos a la capa òptica, presentem un nou particionament del conjunt de longituds d'ona que permet maximitzar, respecte el cas habitual, la quantitat de tràfic extra proveït en entorns de protecció compartida. Concretament, definim diversos models estadístics per estimar la quantitat de tràfic donat un grau de servei objectiu, i diferents models de planificació de xarxa amb l'objectiu de maximitzar els ingressos previstos i el valor actual net de la xarxa. Després de resoldre aquests problemes per xarxes reals, concloem que la nostra proposta maximitza ambdós objectius. En tercer lloc, afrontem el disseny de xarxes multicapa robustes davant de fallida simple a la capa IP/MPLS i als enllaços de fibra. Per resoldre aquest problema eficientment, proposem un enfocament basat en sobre-dimensionar l'equipament de la capa IP/MPLS i recuperar la connectivitat i el comparem amb la solució convencional basada en duplicar la capa IP/MPLS. Després de comparar solucions mitjançant models ILP i heurístiques, concloem que la nostra solució permet obtenir un estalvi significatiu en termes de costos de desplegament. Com a quart objectiu, introduïm un mecanisme adaptatiu per reduir l'ús de ports opto-electrònics (O/E) en xarxes multicapa sota escenaris de tràfic dinàmic. Una formulació ILP i diverses heurístiques són desenvolupades per resoldre aquest problema, que permet reduir significativament l’ús de ports O/E en temps molt curts. Finalment, adrecem el problema de disseny resilient del pla de control GMPLS. Després de proposar un nou model analític per quantificar la resiliència en topologies mallades de pla de control, usem aquest model per proposar un problema de disseny de pla de control. Proposem un procediment iteratiu lineal i una heurística i els usem per resoldre instàncies reals, arribant a la conclusió que es pot reduir significativament la quantitat d'enllaços del pla de control sense afectar la qualitat de servei a la xarxa.The explosion of IP traffic due to the increase of IP-based multimedia services such as HDTV or video conferencing poses new challenges to network operators to provide a cost-effective data transmission. Although Dense Wavelength Division Multiplexing (DWDM) meshed transport networks support high-speed optical connections, these networks lack the flexibility to support sub-wavelength traffic leading to poor bandwidth usage. To cope with the transport of that huge and heterogeneous amount of traffic, multilayer networks represent the most accepted architectural solution. Multilayer optical networks allow optimizing network capacity by means of packing several low-speed traffic streams into higher-speed optical connections (lightpaths). During this operation, a dynamic virtual topology is created and modified the whole time thanks to a control plane responsible for the establishment, maintenance, and release of connections. Because of this dynamicity, a suboptimal allocation of resources may exist at any time. In this context, a periodically resource reallocation could be deployed in the network, thus improving network resource utilization. This thesis is devoted to the characterization, planning, and re-optimization of next-generation multilayer networks from an integral perspective including physical layer, optical layer, virtual layer, and control plane optimization. To this aim, statistical models, mathematical programming models and meta-heuristics are developed. More specifically, this main objective has been attained by developing five goals covering different open issues. First, we provide a statistical methodology to improve the computation of the Q-factor for impairment-aware routing and wavelength assignment problems (IA-RWA). To this aim we propose two statistical models to compute the Cross-Phase Modulation variance (which represents the bottleneck in terms of computation time and complexity) in off-line and on-line IA-RWA problems, proving the accuracy of both models when computing Q-factor values in real traffic scenarios. Second and moving to the optical layer, we present a new wavelength partitioning scheme that allows maximizing the amount of extra traffic provided in shared path protected environments compared with current solutions. Specifically, we define several statistical models to estimate the traffic intensity given a target grade of service, and different network planning problems for maximizing the expected revenues and net present value. After solving these problems for real networks, we conclude that our proposed scheme maximizes both revenues and NPV. Third, we tackle the design of survivable multilayer networks against single failures at the IP/MPLS layer and WSON links. To efficiently solve this problem, we propose a new approach based on over-dimensioning IP/MPLS devices and lightpath connectivity and recovery and we compare it against the conventional solution based on duplicating backbone IP/MPLS nodes. After evaluating both approaches by means of ILP models and heuristic algorithms, we conclude that our proposed approach leads to significant CAPEX savings. Fourth, we introduce an adaptive mechanism to reduce the usage of opto-electronic (O/E) ports of IP/MPLS-over-WSON multilayer networks in dynamic scenarios. A ILP formulation and several heuristics are developed to solve this problem, which allows significantly reducing the usage of O/E ports in very short running times. Finally, we address the design of resilient control plane topologies in GMPLS-enabled transport networks. After proposing a novel analytical model to quantify the resilience in mesh control plane topologies, we use this model to propose a problem to design the control plane topology. An iterative model and a heuristic are proposed and used to solve real instances, concluding that a significant reduction in the number of control plane links can be performed without affecting the quality of service of the network

Fluigi: an end-to-end software workflow for microfluidic design

One goal of synthetic biology is to design and build genetic circuits in living cells for a range of applications with implications in health, materials, and sensing. Computational design methodologies allow for increased performance and reliability of these circuits. Major challenges that remain include increasing the scalability and robustness of engineered biological systems and streamlining and automating the synthetic biology workflow of “specify-design-build-test.” I summarize the advances in microfluidic technology, particularly microfluidic large scale integration, that can be used to address the challenges facing each step of the synthetic biology workflow for genetic circuits. Microfluidic technologies allow precise control over the flow of biological content within microscale devices, and thus may provide more reliable and scalable construction of synthetic biological systems. However, adoption of microfluidics for synthetic biology has been slow due to the expert knowledge and equipment needed to fabricate and control devices. I present an end-to-end workflow for a computer-aided-design (CAD) tool, Fluigi, for designing microfluidic devices and for integrating biological Boolean genetic circuits with microfluidics. The workflow starts with a ``netlist" input describing the connectivity of microfluidic device to be designed, and proceeds through placement, routing, and design rule checking in a process analogous to electronic computer aided design (CAD). The output is an image of the device for printing as a mask for photolithography or for computer numerical control (CNC) machining. I also introduced a second workflow to allocate biological circuits to microfluidic devices and to generate the valve control scheme to enable biological computation on the device. I used the CAD workflow to generate 15 designs including gradient generators, rotary pumps, and devices for housing biological circuits. I fabricated two designs, a gradient generator with CNC machining and a device for computing a biological XOR function with multilayer soft lithography, and verified their functions with dye. My efforts here show a first end-to-end demonstration of an extensible and foundational microfluidic CAD tool from design concept to fabricated device. This work provides a platform that when completed will automatically synthesize high level functional and performance specifications into fully realized microfluidic hardware, control software, and synthetic biological wetware