Building Efficient and Compact Data Structures for Simplicial Complexes

The Simplex Tree (ST) is a recently introduced data structure that can represent abstract simplicial complexes of any dimension and allows efficient implementation of a large range of basic operations on simplicial complexes. In this paper, we show how to optimally compress the Simplex Tree while retaining its functionalities. In addition, we propose two new data structures called the Maximal Simplex Tree (MxST) and the Simplex Array List (SAL). We analyze the compressed Simplex Tree, the Maximal Simplex Tree, and the Simplex Array List under various settings.Comment: An extended abstract appeared in the proceedings of SoCG 201

Regular Languages meet Prefix Sorting

Indexing strings via prefix (or suffix) sorting is, arguably, one of the most successful algorithmic techniques developed in the last decades. Can indexing be extended to languages? The main contribution of this paper is to initiate the study of the sub-class of regular languages accepted by an automaton whose states can be prefix-sorted. Starting from the recent notion of Wheeler graph [Gagie et al., TCS 2017]-which extends naturally the concept of prefix sorting to labeled graphs-we investigate the properties of Wheeler languages, that is, regular languages admitting an accepting Wheeler finite automaton. Interestingly, we characterize this family as the natural extension of regular languages endowed with the co-lexicographic ordering: when sorted, the strings belonging to a Wheeler language are partitioned into a finite number of co-lexicographic intervals, each formed by elements from a single Myhill-Nerode equivalence class. Moreover: (i) We show that every Wheeler NFA (WNFA) with $n$ states admits an equivalent Wheeler DFA (WDFA) with at most $2n-1-|\Sigma|$ states that can be computed in $O(n^3)$ time. This is in sharp contrast with general NFAs. (ii) We describe a quadratic algorithm to prefix-sort a proper superset of the WDFAs, a $O(n\log n)$-time online algorithm to sort acyclic WDFAs, and an optimal linear-time offline algorithm to sort general WDFAs. By contribution (i), our algorithms can also be used to index any WNFA at the moderate price of doubling the automaton's size. (iii) We provide a minimization theorem that characterizes the smallest WDFA recognizing the same language of any input WDFA. The corresponding constructive algorithm runs in optimal linear time in the acyclic case, and in $O(n\log n)$ time in the general case. (iv) We show how to compute the smallest WDFA equivalent to any acyclic DFA in nearly-optimal time.Comment: added minimization theorems; uploaded submitted version; New version with new results (W-MH theorem, linear determinization), added author: Giovanna D'Agostin

A Fast Algorithm Finding the Shortest Reset Words

In this paper we present a new fast algorithm finding minimal reset words for finite synchronizing automata. The problem is know to be computationally hard, and our algorithm is exponential. Yet, it is faster than the algorithms used so far and it works well in practice. The main idea is to use a bidirectional BFS and radix (Patricia) tries to store and compare resulted subsets. We give both theoretical and practical arguments showing that the branching factor is reduced efficiently. As a practical test we perform an experimental study of the length of the shortest reset word for random automata with $n$ states and 2 input letters. We follow Skvorsov and Tipikin, who have performed such a study using a SAT solver and considering automata up to $n=100$ states. With our algorithm we are able to consider much larger sample of automata with up to $n=300$ states. In particular, we obtain a new more precise estimation of the expected length of the shortest reset word $\approx 2.5\sqrt{n-5}$.Comment: COCOON 2013. The final publication is available at http://link.springer.com/chapter/10.1007%2F978-3-642-38768-5_1

DEBS Grand Challenge: Glasgow Automata Illustrated

The challenge is solved using Glasgow automata, concise complex event processing engines executable in the context of a topic-based publish/subscribe cache of event streams and relations. The imperative programming style of the Glasgow Automaton Programming Language (GAPL) enables multiple, efficient realisations of the two challenge queries

Fast and Compact Regular Expression Matching

We study 4 problems in string matching, namely, regular expression matching, approximate regular expression matching, string edit distance, and subsequence indexing, on a standard word RAM model of computation that allows logarithmic-sized words to be manipulated in constant time. We show how to improve the space and/or remove a dependency on the alphabet size for each problem using either an improved tabulation technique of an existing algorithm or by combining known algorithms in a new way

Z2SAL: a translation-based model checker for Z

Despite being widely known and accepted in industry, the Z formal specification language has not so far been well supported by automated verification tools, mostly because of the challenges in handling the abstraction of the language. In this paper we discuss a novel approach to building a model-checker for Z, which involves implementing a translation from Z into SAL, the input language for the Symbolic Analysis Laboratory, a toolset which includes a number of model-checkers and a simulator. The Z2SAL translation deals with a number of important issues, including: mapping unbounded, abstract specifications into bounded, finite models amenable to a BDD-based symbolic checker; converting a non-constructive and piecemeal style of functional specification into a deterministic, automaton-based style of specification; and supporting the rich set-based vocabulary of the Z mathematical toolkit. This paper discusses progress made towards implementing as complete and faithful a translation as possible, while highlighting certain assumptions, respecting certain limitations and making use of available optimisations. The translation is illustrated throughout with examples; and a complete working example is presented, together with performance data

Synchronous Subsequentiality and Approximations to Undecidable Problems

We introduce the class of synchronous subsequential relations, a subclass of the synchronous relations which embodies some properties of subsequential relations. If we take relations of this class as forming the possible transitions of an infinite automaton, then most decision problems (apart from membership) still remain undecidable (as they are for synchronous and subsequential rational relations), but on the positive side, they can be approximated in a meaningful way we make precise in this paper. This might make the class useful for some applications, and might serve to establish an intermediate position in the trade-off between issues of expressivity and (un)decidability.Comment: In Proceedings GandALF 2015, arXiv:1509.0685