Deployment of Open Standards in the Public Administration

Open Source Software is receiving an increasing attention in the public administration. The aim of the paper is to discuss the deployment of open source software for office automation and to present a synthesis of the up to date status. It is intended to sensitize provosts and policy makers regarding the value and benefits of open standards in public administration. The article explains why anyone would choose an open standard format for office documents, instead of the obsolete binary formats. The responsibility of the public sector to protect the permanently, open and free access to public documents is emphasized. Switching the IT systems to open source and open standards can solve the problems with significant financial benefits. One available open source software solution in the field, the Open Office suite, is presented as a viable and free alternative to commercial products. The article reviews next the existent competing open standards - OpenDocument and OpenXML. Finally, the measures and efforts implied to make a non invasive migration to open technologies are presented.open source software, open standards, personal productivity, transition

Open software and standards in the realm of laser scanning technology

Abstract This review aims at introducing laser scanning technology and providing an overview of the contribution of open source projects for supporting the utilization and analysis of laser scanning data. Lidar technology is pushing to new frontiers in mapping and surveying topographic data. The open source community has supported this by providing libraries, standards, interfaces, modules all the way to full software. Such open solutions provide scientists and end-users valuable tools to access and work with lidar data, fostering new cutting-edge investigation and improvements of existing methods. The first part of this work provides an introduction on laser scanning principles, with references for further reading. It is followed by sections respectively reporting on open standards and formats for lidar data, tools and finally web-based solutions for accessing lidar data. It is not intended to provide a thorough review of state of the art regarding lidar technology itself, but to provide an overview of the open source toolkits available to the community to access, visualize, edit and process point clouds. A range of open source features for lidar data access and analysis is provided, providing an overview of what can be done with alternatives to commercial end-to-end solutions. Data standards and formats are also discussed, showing what are the challenges for storing and accessing massive point clouds. The desiderata are to provide scientists that have not yet worked with lidar data an overview of how this technology works and what open source tools can be a valid solution for their needs in analysing such data. Researchers that are already involved with lidar data will hopefully get ideas on integrating and improving their workflow through open source solutions

Open Babel: An open chemical toolbox

Background: A frequent problem in computational modeling is the interconversion of chemical structures between different formats. While standard interchange formats exist (for example, Chemical Markup Language) and de facto standards have arisen (for example, SMILES format), the need to interconvert formats is a continuing problem due to the multitude of different application areas for chemistry data, differences in the data stored by different formats (0D versus 3D, for example), and competition between software along with a lack of vendorneutral formats. Results: We discuss, for the first time, Open Babel, an open-source chemical toolbox that speaks the many languages of chemical data. Open Babel version 2.3 interconverts over 110 formats. The need to represent such a wide variety of chemical and molecular data requires a library that implements a wide range of cheminformatics algorithms, from partial charge assignment and aromaticity detection, to bond order perception and canonicalization. We detail the implementation of Open Babel, describe key advances in the 2.3 release, and outline a variety of uses both in terms of software products and scientific research, including applications far beyond simple format interconversion. Conclusions: Open Babel presents a solution to the proliferation of multiple chemical file formats. In addition, it provides a variety of useful utilities from conformer searching and 2D depiction, to filtering, batch conversion, and substructure and similarity searching. For developers, it can be used as a programming library to handle chemical data in areas such as organic chemistry, drug design, materials science, and computational chemistry. It is freely available under an open-source license fro

Facilitate Visualization and Distribution of NASA\u27s Environmental Science Data through Open Standards and Open Source Software for Geospatial

This paper introduces the utilization of open standards and open source software for visualization and distribution of geospatial environmental science data at the Oak Ridge National Laboratory Distributed Active Archive Center (ORNL DAAC). The ORNL DAAC is one of the NASA Earth Observing System Data and Information System (EOSDIS) data centers. A big challenge for the ORNL DAAC (https://daac.ornl.gov) is to efficiently manage over a thousand heterogeneous environmental data, collected through field campaigns, aircraft/satellite observations, and model simulations. ORNL DAAC also has to provide tools to easily find, visualize, and access the heterogeneous data. To address this challenge, the ORNL DAAC has leveraged Open Geospatial Consortium (OGC) standards and open source software to develop the Spatial Data Access Tool (SDAT, https://webmap.ornl.gov/ogc). SDAT is a suite of open standards-based web mapping, subsetting, and transformation services and applications that allow users to visualize and download geospatial data in customized spatial/temporal extents, formats, and projections. The open source MapServer/Geospatial Data Abstraction Library (GDAL) powers the backend OGC Web services of SDAT. Open source Javascript libraries, including OpenLayers, GeoExt, and proj4js, were used to create the SDAT Web User Interface and MapWidget, a light-weight Javascript library that allows SDAT visualization to be easily embedded on any webpage. SDAT also provides KML files to enable interactive data visualization in the popular Google Earth application or any KML-compatible client. SDAT provides a common framework and standard service interfaces for ORNL DAAC data holdings. SDAT user interface hides their heterogeneity from end users, and promotes their usage. SDAT facilitates integration of ORNL DAAC data resources with other related data systems. In 2016, SDAT served more than 2 million mapping requests and 72 thousand customized data downloads from over 2500 distinct data users

Standardisation of Practices in Open Source Hardware

Standardisation is an important component in the maturation of any field of technology. It contributes to the formation of a recognisable identity and enables interactions with a wider community. This article reviews past and current standardisation initiatives in the field of Open Source Hardware (OSH). While early initiatives focused on aspects such as licencing, intellectual property and documentation formats, recent efforts extend to ways for users to exercise their rights under open licences and to keep OSH projects discoverable and accessible online. We specifically introduce two standards that are currently being released and call for early users and contributors, the DIN SPEC 3105 and the Open Know How Manifest Specification. Finally, we reflect on challenges around standardisation in the community and relevant areas for future development such as an open tool chain, modularity and hardware specific interface standards.Comment: 9 Pages without abstract and references (else 13), no figure

Dissemination of metabolomics results: role of MetaboLights and COSMOS.

RIGHTS : This article is licensed under the BioMed Central licence at http://www.biomedcentral.com/about/license which is similar to the 'Creative Commons Attribution Licence'. In brief you may : copy, distribute, and display the work; make derivative works; or make commercial use of the work - under the following conditions: the original author must be given credit; for any reuse or distribution, it must be made clear to others what the license terms of this work are.With ever-increasing amounts of metabolomics data produced each year, there is an even greater need to disseminate data and knowledge produced in a standard and reproducible way. To assist with this a general purpose, open source metabolomics repository, MetaboLights, was launched in 2012. To promote a community standard, initially culminated as metabolomics standards initiative (MSI), COordination of Standards in MetabOlomicS (COSMOS) was introduced. COSMOS aims to link life science e-infrastructures within the worldwide metabolomics community as well as develop and maintain open source exchange formats for raw and processed data, ensuring better flow of metabolomics information

APyCE: A Python module for parsing and visualizing 3D reservoir digital twin models

Engineers, geoscientists, and analysts can benefit from fast, easy, and real-time immersive 3D visualization to enhance their understanding and collaboration in a virtual 3D world. However, converting 3D reservoir data formats between different software programs and open-source standards can be challenging due to the complexity of programming and discrepancies in internal data structures. This paper introduces an open-source Python implementation focused on parsing industry reservoir data formats into a popular opensource visualization data format, Visual Toolkit files. Using object-oriented programming, a simple workflow was developed to export corner-point grids to Visual Toolkit-hexahedron structures. To demonstrate the utility of the software, standard raw input files of reservoir models are processed and visualized using Paraview. This tool aims to accelerate the digital transformation of the oil and gas industry in terms of 3D digital content generation and collaboration.Document Type: Short communicationCited as: Tosta, M., Oliveira, G. P., Wang, B., Chen, Z., Liao, Q. APyCE: A Python module for parsing and visualizing 3D reservoir digital twin models. Advances in Geo-Energy Research, 2023, 8(3): 206-210. https://doi.org/10.46690/ager.2023.06.0

Less Code, More Product: Leveraging Open Source Technologies To Develop Digital Library Collections

Over the last 10 years, the research library community has made significant investments in developing and utilizing open-source software products to build sustainable digital library infrastructure and services at scale. Community-driven open standards, data formats, protocols and governance are crucial to fulfilling the objective of scalable preservation and access infrastructure. Our collective investments in such development has the further benefit of helping reduce the amount of locally written code while delivering more “product” in the form of online archives, digital collections, exhibitions and services, offering flexible solutions to unique requirements. A good example of the benefits of leveraging open-source infrastructure can be seen in Columbia University’s Seymour B. Durst Old York Library project. In August 2011, Columbia received a substantial gift of New York-related materials from the Old York Foundation together with supporting funds to accession, process and produce a digital library based on the materials. The gift funded digitization of this large and unique collection and provided capacity-building funding that helped us to explore new project management models, establish new collaborative workflows and production processes, and expand development of our digital library infrastructure and feature set. The session will include an overview of Columbia’s strategy for leveraging community-based, open approaches to digital library infrastructure and also describe the specific set of open-source technologies used to implement this and other digital library projects. It will also describe how the Old York Library project helped to accelerate our development efforts, reduce the amount of locally written code, and build more sustainable approaches to meet the needs of unique and distinctive digital collections

Seismic-py: Reading Seismic Data with Python

The field of seismic exploration of the Earth has changed dramatically over the last half a century. The Society of Exploration Geophysicists (SEG) has worked to create standards to store the vast amounts of seismic data in a way that will be portable across computer architectures. However, it has been impossible to predict the needs of the immense range of seismic data acquisition systems. As a result, vendors have had to bend the rules to accommodate the needs of new instruments and experiment types. For low level access to seismic data, there is need for a standard open source library to allow access to a wide range of vendor data files that can handle all of the variations. A new seismic software package, seismic-py, provides an infrastructure for creating and managing drivers for each particular format. Drivers can be derived from one of the known formats and altered to handle any slight variations. Alternatively drivers can be developed from scratch for formats that are very different from any previously defined format. Python has been the key to making driver development easy and efficient to implement. The goal of seismic-py is to be the base system that will power a wide range of experimentation with seismic data and at the same time provide clear documentation for the historical record of seismic data formats

A System for Information Management in BioMedical Studies—SIMBioMS

Summary: SIMBioMS is a web-based open source software system for managing data and information in biomedical studies. It provides a solution for the collection, storage, management and retrieval of information about research subjects and biomedical samples, as well as experimental data obtained using a range of high-throughput technologies, including gene expression, genotyping, proteomics and metabonomics. The system can easily be customized and has proven to be successful in several large-scale multi-site collaborative projects. It is compatible with emerging functional genomics data standards and provides data import and export in accepted standard formats. Protocols for transferring data to durable archives at the European Bioinformatics Institute have been implemented