Conceptual modelling and the quality of ontologies: A comparison between object-role modelling and the object paradigm

Ontologies are key enablers for sharing precise and machine-understandable semantics among different applications and parties. Yet, for ontologies to meet these expectations, their quality must be of a good standard. The quality of an ontology is strongly based on the design method employed. This paper addresses the design problems related to the modelling of ontologies, with specific concentration on the issues related to the quality of the conceptualisations produced. The paper aims to demonstrate the impact of the modelling paradigm adopted on the quality of ontological models and, consequently, the potential impact that such a decision can have in relation to the development of software applications. To this aim, an ontology that is conceptualised based on the Object Role Modelling (ORM) approach is re-engineered into a one modelled on the basis of the Object Paradigm (OP). Next, the two ontologies are analytically compared using the specified criteria. The conducted comparison highlights that using the OP for ontology conceptualisation can provide more expressive, reusable, objective and temporal ontologies than those conceptualised on the basis of the ORM approach

Journal Staff

With the proliferation of ontologies and their use in semantically-enabled applications, the issue of finding and repairing defects in ontologies has become increasingly important. Current work mostly targets debugging semantic defects in ontologies. In our work, we focus on another kind of severe defects, modeling defects, which require domain knowledge to detect and resolve. In particular, we debug the missing structural relations (is-a hierarchy) in a fundamental kind of ontologies, i.e. taxonomies. The context of our study is an ontology network consisting of several taxonomies networked by partial reference alignments. We use the ontology network as domain knowledge to detect the missing is-a relations in these ontologies. We also propose algorithms to generate possible repairing actions, rank missing is-a relations, recommend and execute repairing actions. Further, we discuss an implemented system RepOSE and experiments on ontologies of the Ontology Alignment Evaluation Initiative and the Finnish Ontology Library Service

Conceptual Modelling and The Quality of Ontologies: Endurantism Vs. Perdurantism

Ontologies are key enablers for sharing precise and machine-understandable semantics among different applications and parties. Yet, for ontologies to meet these expectations, their quality must be of a good standard. The quality of an ontology is strongly based on the design method employed. This paper addresses the design problems related to the modelling of ontologies, with specific concentration on the issues related to the quality of the conceptualisations produced. The paper aims to demonstrate the impact of the modelling paradigm adopted on the quality of ontological models and, consequently, the potential impact that such a decision can have in relation to the development of software applications. To this aim, an ontology that is conceptualised based on the Object-Role Modelling (ORM) approach (a representative of endurantism) is re-engineered into a one modelled on the basis of the Object Paradigm (OP) (a representative of perdurantism). Next, the two ontologies are analytically compared using the specified criteria. The conducted comparison highlights that using the OP for ontology conceptualisation can provide more expressive, reusable, objective and temporal ontologies than those conceptualised on the basis of the ORM approach

From Information to Sense-Making: Fetching and Querying Semantic Repositories

Information, its gathering, sharing, and storage, is growing at a very rapid rate. Information turned into knowledge leads to sense- making. Ontologies, and their representations in RDF, are increasingly being used to turn information into knowledge. This paper describes how to leverage the power of ontologies and semantic repositories to turn today’s glut of information into sense-making. This would enable better applications to be built making users’ lives easier and more effective

Re-use of an ontology for modelling urban energy systems

The use of ontologies for the interoperability of software models is widespread, with many applications also in the energy domain. By formulating a shared data structure and a definition of concepts and their properties, a language is created that can be used between modellers and - formalised in an ontology - between model components. When modelling energy systems, connections between different infrastructures are critical, e.g. the interaction between the gas and electricity markets or the need for various infrastructures including power, heat, water and transport in cities. While a commonly shared ontology of energy systems would be highly desirable, the fact is that different existing models or applications already use dedicated ontologies, and have been demonstrated to work well using them. To benefit from linking data sources and connecting models developed with different ontologies, a translation between concepts can be made. In this paper a model of an urban energy system built upon one ontology is initialised using energy transformation technologies defined in another ontology, thus illustrating how this common perspective might benefit researchers in the energy domain. ©2010 IEEE

Winnowing ontologies based on application use

The requirements of specific applications and services are often over estimated when ontologies are reused or built. This sometimes results in many ontologies being too large for their intended purposes. It is not uncommon that when applications and services are deployed over an ontology, only a few parts of the ontology are queried and used. Identifying which parts of an ontology are being used could be helpful to winnow the ontology, i.e., simplify or shrink the ontology to smaller, more fit for purpose size. Some approaches to handle this problem have already been suggested in the literature. However, none of that work showed how ontology-based applications can be used in the ontology-resizing process, or how they might be affected by it. This paper presents a study on the use of the AKT Reference Ontology by a number of applications and services,and investigates the possibility of relying on this usage information to winnow that ontology

Semantic Integration Portal

The Semantic Integration Portal is a demonstration of the potential capabilities of Semantic Web applications in a knowledge-rich context. Source data is taken from different online terrorist incident aggregators and marked up according to ontologies specific to those domains. Unlike other semantic web techniques, which scrape the internet for raw data and then mark-up against a standard ontology, the approach here is to allow each data source to have its own domain-specific ontology. This allows the data producers the opportunity to mark up their data in their own way, producing RDF data according to their own ontologies without the need to conform to a standard. A variety of semantic integration techniques can then be applied to these ontologies, both automatic and interactive, allowing data from both sets to be viewed in a suitable application, in this case the mspace browser. Future iterations of the semantic integration portal aim to introduce more automated ontology-mapping techniques, aligning data from a variety of diverse sources with less need for human intervention

Modularization for the Cell Ontology

One of the premises of the OBO Foundry is that development of an orthogonal set of ontologies will increase domain expert contributions and logical interoperability, and decrease maintenance workload. For these reasons, the Cell Ontology (CL) is being re-engineered. This process requires the extraction of sub-modules from existing OBO ontologies, which presents a number of practical engineering challenges. These extracted modules may be intended to cover a narrow or a broad set of species. In addition, applications and resources that make use of the Cell Ontology have particular modularization requirements, such as the ability to extract custom subsets or unions of the Cell Ontology with other OBO ontologies. These extracted modules may be intended to cover a narrow or a broad set of species, which presents unique complications.

We discuss some of these requirements, and present our progress towards a customizable simple-to-use modularization tool that leverages existing OWL-based tools and opens up their use for the CL and other ontologies

Towards Context Driven Modularization of Large Biomedical Ontologies

Formal knowledge about human anatomy, radiology or diseases is necessary to support clinical applications such as medical image search. This machine processable knowledge can be acquired from biomedical domain ontologies, which however, are typically very large and complex models. Thus, their straightforward incorporation into the software applications becomes difficult. In this paper we discuss first ideas on a statistical approach for modularizing large medical ontologies and we prioritize the practical applicability aspect. The underlying assumption is that the application relevant ontology fragments, i.e. modules, can be identified by the statistical analysis of the ontology concepts in the domain corpus. Accordingly, we argue that most frequently occurring concepts in the domain corpus define the application context and can therefore potentially yield the relevant ontology modules. We illustrate our approach on an example case that involves a large ontology on human anatomy and report on our first manual experiments

Multilingual Lexical Semantic Resources for Ontology Translation

We describe the integration of some multilingual language resources in ontological descriptions, with the purpose of providing ontologies, which are normally using concept labels in just one (natural) language, with multilingual facility in their design and use in the context of Semantic Web applications, supporting both the semantic annotation of textual documents with multilingual ontology labels and ontology extraction from multilingual text sources