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Sequential Monte Carlo EM for multivariate probit models
Multivariate probit models (MPM) have the appealing feature of capturing some
of the dependence structure between the components of multidimensional binary
responses. The key for the dependence modelling is the covariance matrix of an
underlying latent multivariate Gaussian. Most approaches to MLE in multivariate
probit regression rely on MCEM algorithms to avoid computationally intensive
evaluations of multivariate normal orthant probabilities. As an alternative to
the much used Gibbs sampler a new SMC sampler for truncated multivariate
normals is proposed. The algorithm proceeds in two stages where samples are
first drawn from truncated multivariate Student distributions and then
further evolved towards a Gaussian. The sampler is then embedded in a MCEM
algorithm. The sequential nature of SMC methods can be exploited to design a
fully sequential version of the EM, where the samples are simply updated from
one iteration to the next rather than resampled from scratch. Recycling the
samples in this manner significantly reduces the computational cost. An
alternative view of the standard conditional maximisation step provides the
basis for an iterative procedure to fully perform the maximisation needed in
the EM algorithm. The identifiability of MPM is also thoroughly discussed. In
particular, the likelihood invariance can be embedded in the EM algorithm to
ensure that constrained and unconstrained maximisation are equivalent. A simple
iterative procedure is then derived for either maximisation which takes
effectively no computational time. The method is validated by applying it to
the widely analysed Six Cities dataset and on a higher dimensional simulated
example. Previous approaches to the Six Cities overly restrict the parameter
space but, by considering the correct invariance, the maximum likelihood is
quite naturally improved when treating the full unrestricted model.Comment: 26 pages, 2 figures. In press, Computational Statistics & Data
Analysi
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