Sandwiching saturation number of fullerene graphs

The saturation number of a graph $G$ is the cardinality of any smallest maximal matching of $G$, and it is denoted by $s(G)$. Fullerene graphs are cubic planar graphs with exactly twelve 5-faces; all the other faces are hexagons. They are used to capture the structure of carbon molecules. Here we show that the saturation number of fullerenes on $n$ vertices is essentially $n/3$

Pattern matching and pattern discovery algorithms for protein topologies

We describe algorithms for pattern matching and pattern learning in TOPS diagrams (formal descriptions of protein topologies). These problems can be reduced to checking for subgraph isomorphism and finding maximal common subgraphs in a restricted class of ordered graphs. We have developed a subgraph isomorphism algorithm for ordered graphs, which performs well on the given set of data. The maximal common subgraph problem then is solved by repeated subgraph extension and checking for isomorphisms. Despite the apparent inefficiency such approach gives an algorithm with time complexity proportional to the number of graphs in the input set and is still practical on the given set of data. As a result we obtain fast methods which can be used for building a database of protein topological motifs, and for the comparison of a given protein of known secondary structure against a motif database

On neighbour sum-distinguishing {0,1}\{0,1\}-edge-weightings of bipartite graphs

Let $S$ be a set of integers. A graph G is said to have the S-property if there exists an S-edge-weighting $w : E(G) \rightarrow S$ such that any two adjacent vertices have different sums of incident edge-weights. In this paper we characterise all bridgeless bipartite graphs and all trees without the $\{0,1\}$-property. In particular this problem belongs to P for these graphs while it is NP-complete for all graphs.Comment: Journal versio

Quantum state-independent contextuality requires 13 rays

We show that, regardless of the dimension of the Hilbert space, there exists no set of rays revealing state-independent contextuality with less than 13 rays. This implies that the set proposed by Yu and Oh in dimension three [Phys. Rev. Lett. 108, 030402 (2012)] is actually the minimal set in quantum theory. This contrasts with the case of Kochen-Specker sets, where the smallest set occurs in dimension four.Comment: 8 pages, 2 tables, 1 figure, v2: minor change