Minimality and mutation-equivalence of polygons

We introduce a concept of minimality for Fano polygons. We show that, up to mutation, there are only finitely many Fano polygons with given singularity content, and give an algorithm to determine the mutation-equivalence classes of such polygons. This is a key step in a program to classify orbifold del Pezzo surfaces using mirror symmetry. As an application, we classify all Fano polygons such that the corresponding toric surface is qG-deformation-equivalent to either (i) a smooth surface; or (ii) a surface with only singularities of type 1/3(1,1).Comment: 29 page

Universal Amplitude Combinations for Self-Avoiding Walks, Polygons and Trails

We give exact relations for a number of amplitude combinations that occur in the study of self-avoiding walks, polygons and lattice trails. In particular, we elucidate the lattice-dependent factors which occur in those combinations which are otherwise universal, show how these are modified for oriented lattices, and give new results for amplitude ratios involving even moments of the area of polygons. We also survey numerical results for a wide range of amplitudes on a number of oriented and regular lattices, and provide some new ones.Comment: 20 pages, NI 92016, OUTP 92-54S, UCSBTH-92-5

The entropic cost to tie a knot

We estimate by Monte Carlo simulations the configurational entropy of $N$-steps polygons in the cubic lattice with fixed knot type. By collecting a rich statistics of configurations with very large values of $N$ we are able to analyse the asymptotic behaviour of the partition function of the problem for different knot types. Our results confirm that, in the large $N$ limit, each prime knot is localized in a small region of the polygon, regardless of the possible presence of other knots. Each prime knot component may slide along the unknotted region contributing to the overall configurational entropy with a term proportional to $\ln N$. Furthermore, we discover that the mere existence of a knot requires a well defined entropic cost that scales exponentially with its minimal length. In the case of polygons with composite knots it turns out that the partition function can be simply factorized in terms that depend only on prime components with an additional combinatorial factor that takes into account the statistical property that by interchanging two identical prime knot components in the polygon the corresponding set of overall configuration remains unaltered. Finally, the above results allow to conjecture a sequence of inequalities for the connective constants of polygons whose topology varies within a given family of composite knot types

Knotting probabilities after a local strand passage in unknotted self-avoiding polygons

We investigate the knotting probability after a local strand passage is performed in an unknotted self-avoiding polygon on the simple cubic lattice. We assume that two polygon segments have already been brought close together for the purpose of performing a strand passage, and model this using Theta-SAPs, polygons that contain the pattern Theta at a fixed location. It is proved that the number of n-edge Theta-SAPs grows exponentially (with n) at the same rate as the total number of n-edge unknotted self-avoiding polygons, and that the same holds for subsets of n-edge Theta-SAPs that yield a specific after-strand-passage knot-type. Thus the probability of a given after-strand-passage knot-type does not grow (or decay) exponentially with n, and we conjecture that instead it approaches a knot-type dependent amplitude ratio lying strictly between 0 and 1. This is supported by critical exponent estimates obtained from a new maximum likelihood method for Theta-SAPs that are generated by a composite (aka multiple) Markov Chain Monte Carlo BFACF algorithm. We also give strong numerical evidence that the after-strand-passage knotting probability depends on the local structure around the strand passage site. Considering both the local structure and the crossing-sign at the strand passage site, we observe that the more "compact" the local structure, the less likely the after-strand-passage polygon is to be knotted. This trend is consistent with results from other strand-passage models, however, we are the first to note the influence of the crossing-sign information. Two measures of "compactness" are used: the size of a smallest polygon that contains the structure and the structure's "opening" angle. The opening angle definition is consistent with one that is measurable from single molecule DNA experiments.Comment: 31 pages, 12 figures, submitted to Journal of Physics