Distinguishing Infections on Different Graph Topologies

The history of infections and epidemics holds famous examples where understanding, containing and ultimately treating an outbreak began with understanding its mode of spread. Influenza, HIV and most computer viruses, spread person to person, device to device, through contact networks; Cholera, Cancer, and seasonal allergies, on the other hand, do not. In this paper we study two fundamental questions of detection: first, given a snapshot view of a (perhaps vanishingly small) fraction of those infected, under what conditions is an epidemic spreading via contact (e.g., Influenza), distinguishable from a "random illness" operating independently of any contact network (e.g., seasonal allergies); second, if we do have an epidemic, under what conditions is it possible to determine which network of interactions is the main cause of the spread -- the causative network -- without any knowledge of the epidemic, other than the identity of a minuscule subsample of infected nodes? The core, therefore, of this paper, is to obtain an understanding of the diagnostic power of network information. We derive sufficient conditions networks must satisfy for these problems to be identifiable, and produce efficient, highly scalable algorithms that solve these problems. We show that the identifiability condition we give is fairly mild, and in particular, is satisfied by two common graph topologies: the grid, and the Erdos-Renyi graphs

Colored Non-Crossing Euclidean Steiner Forest

Given a set of $k$-colored points in the plane, we consider the problem of finding $k$ trees such that each tree connects all points of one color class, no two trees cross, and the total edge length of the trees is minimized. For $k=1$, this is the well-known Euclidean Steiner tree problem. For general $k$, a $k\rho$-approximation algorithm is known, where $\rho \le 1.21$ is the Steiner ratio. We present a PTAS for $k=2$, a $(5/3+\varepsilon)$-approximation algorithm for $k=3$, and two approximation algorithms for general~$k$, with ratios $O(\sqrt n \log k)$ and $k+\varepsilon$

A Distributed Routing Algorithm for Internet-wide Geocast

Geocast is the concept of sending data packets to nodes in a specified geographical area instead of nodes with a specific address. To route geocast messages to their destination we need a geographic routing algorithm that can route packets efficiently to the devices inside the destination area. Our goal is to design an algorithm that can deliver shortest path tree like forwarding while relying purely on distributed data without central knowledge. In this paper, we present two algorithms for geographic routing. One based purely on distance vector data, and one more complicated algorithm based on path data. In our evaluation, we show that our purely distance vector based algorithm can come close to shortest path tree performance when a small number of routers are present in the destination area. We also show that our path based algorithm can come close to the performance of a shortest path tree in almost all geocast situations

Spanning trees short or small

We study the problem of finding small trees. Classical network design problems are considered with the additional constraint that only a specified number $k$ of nodes are required to be connected in the solution. A prototypical example is the $k$MST problem in which we require a tree of minimum weight spanning at least $k$ nodes in an edge-weighted graph. We show that the $k$MST problem is NP-hard even for points in the Euclidean plane. We provide approximation algorithms with performance ratio $2\sqrt{k}$ for the general edge-weighted case and $O(k^{1/4})$ for the case of points in the plane. Polynomial-time exact solutions are also presented for the class of decomposable graphs which includes trees, series-parallel graphs, and bounded bandwidth graphs, and for points on the boundary of a convex region in the Euclidean plane. We also investigate the problem of finding short trees, and more generally, that of finding networks with minimum diameter. A simple technique is used to provide a polynomial-time solution for finding $k$-trees of minimum diameter. We identify easy and hard problems arising in finding short networks using a framework due to T. C. Hu.Comment: 27 page

Squarepants in a Tree: Sum of Subtree Clustering and Hyperbolic Pants Decomposition

We provide efficient constant factor approximation algorithms for the problems of finding a hierarchical clustering of a point set in any metric space, minimizing the sum of minimimum spanning tree lengths within each cluster, and in the hyperbolic or Euclidean planes, minimizing the sum of cluster perimeters. Our algorithms for the hyperbolic and Euclidean planes can also be used to provide a pants decomposition, that is, a set of disjoint simple closed curves partitioning the plane minus the input points into subsets with exactly three boundary components, with approximately minimum total length. In the Euclidean case, these curves are squares; in the hyperbolic case, they combine our Euclidean square pants decomposition with our tree clustering method for general metric spaces.Comment: 22 pages, 14 figures. This version replaces the proof of what is now Lemma 5.2, as the previous proof was erroneou