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Placenta segmentation in ultrasound imaging: Addressing sources of uncertainty and limited field-of-view
Automatic segmentation of the placenta in fetal ultrasound (US) is challenging due to the (i) high diversity of placenta appearance, (ii) the restricted quality in US resulting in highly variable reference annotations, and (iii) the limited field-of-view of US prohibiting whole placenta assessment at late gestation. In this work, we address these three challenges with a multi-task learning approach that combines the classification of placental location (e.g., anterior, posterior) and semantic placenta segmentation in a single convolutional neural network. Through the classification task the model can learn from larger and more diverse datasets while improving the accuracy of the segmentation task in particular in limited training set conditions. With this approach we investigate the variability in annotations from multiple raters and show that our automatic segmentations (Dice of 0.86 for anterior and 0.83 for posterior placentas) achieve human-level performance as compared to intra- and inter-observer variability. Lastly, our approach can deliver whole placenta segmentation using a multi-view US acquisition pipeline consisting of three stages: multi-probe image acquisition, image fusion and image segmentation. This results in high quality segmentation of larger structures such as the placenta in US with reduced image artifacts which are beyond the field-of-view of single probes
Bayesian networks for disease diagnosis: What are they, who has used them and how?
A Bayesian network (BN) is a probabilistic graph based on Bayes' theorem,
used to show dependencies or cause-and-effect relationships between variables.
They are widely applied in diagnostic processes since they allow the
incorporation of medical knowledge to the model while expressing uncertainty in
terms of probability. This systematic review presents the state of the art in
the applications of BNs in medicine in general and in the diagnosis and
prognosis of diseases in particular. Indexed articles from the last 40 years
were included. The studies generally used the typical measures of diagnostic
and prognostic accuracy: sensitivity, specificity, accuracy, precision, and the
area under the ROC curve. Overall, we found that disease diagnosis and
prognosis based on BNs can be successfully used to model complex medical
problems that require reasoning under conditions of uncertainty.Comment: 22 pages, 5 figures, 1 table, Student PhD first pape
Neural Architecture Search: Insights from 1000 Papers
In the past decade, advances in deep learning have resulted in breakthroughs
in a variety of areas, including computer vision, natural language
understanding, speech recognition, and reinforcement learning. Specialized,
high-performing neural architectures are crucial to the success of deep
learning in these areas. Neural architecture search (NAS), the process of
automating the design of neural architectures for a given task, is an
inevitable next step in automating machine learning and has already outpaced
the best human-designed architectures on many tasks. In the past few years,
research in NAS has been progressing rapidly, with over 1000 papers released
since 2020 (Deng and Lindauer, 2021). In this survey, we provide an organized
and comprehensive guide to neural architecture search. We give a taxonomy of
search spaces, algorithms, and speedup techniques, and we discuss resources
such as benchmarks, best practices, other surveys, and open-source libraries
Bayesian Reconstruction of Magnetic Resonance Images using Gaussian Processes
A central goal of modern magnetic resonance imaging (MRI) is to reduce the
time required to produce high-quality images. Efforts have included hardware
and software innovations such as parallel imaging, compressed sensing, and deep
learning-based reconstruction. Here, we propose and demonstrate a Bayesian
method to build statistical libraries of magnetic resonance (MR) images in
k-space and use these libraries to identify optimal subsampling paths and
reconstruction processes. Specifically, we compute a multivariate normal
distribution based upon Gaussian processes using a publicly available library
of T1-weighted images of healthy brains. We combine this library with
physics-informed envelope functions to only retain meaningful correlations in
k-space. This covariance function is then used to select a series of
ring-shaped subsampling paths using Bayesian optimization such that they
optimally explore space while remaining practically realizable in commercial
MRI systems. Combining optimized subsampling paths found for a range of images,
we compute a generalized sampling path that, when used for novel images,
produces superlative structural similarity and error in comparison to
previously reported reconstruction processes (i.e. 96.3% structural similarity
and <0.003 normalized mean squared error from sampling only 12.5% of the
k-space data). Finally, we use this reconstruction process on pathological data
without retraining to show that reconstructed images are clinically useful for
stroke identification
Neuroanatomical and gene expression features of the rabbit accessory olfactory system. Implications of pheromone communication in reproductive behaviour and animal physiology
Mainly driven by the vomeronasal system (VNS), pheromone
communication is involved in many species-specific fundamental innate socio-sexual behaviors such as mating and
fighting, which are essential for animal reproduction and survival. Rabbits are a unique model for studying
chemocommunication due to the discovery of the rabbit mammary pheromone, but paradoxically there has been a
lack of knowledge regarding its VNS pathway. In this work, we aim at filling this gap by approaching the system
from an integrative point of view, providing extensive anatomical and genomic data of the rabbit VNS, as well as
pheromone-mediated reproductive and behavioural studies. Our results build strong foundation for further
translational studies which aim at implementing the use of pheromones to improve animal production and welfare
Semi-supervised detection of structural damage using Variational Autoencoder and a One-Class Support Vector Machine
In recent years, Artificial Neural Networks (ANNs) have been introduced in
Structural Health Monitoring (SHM) systems. A semi-supervised method with a
data-driven approach allows the ANN training on data acquired from an undamaged
structural condition to detect structural damages. In standard approaches,
after the training stage, a decision rule is manually defined to detect
anomalous data. However, this process could be made automatic using machine
learning methods, whom performances are maximised using hyperparameter
optimization techniques. The paper proposes a semi-supervised method with a
data-driven approach to detect structural anomalies. The methodology consists
of: (i) a Variational Autoencoder (VAE) to approximate undamaged data
distribution and (ii) a One-Class Support Vector Machine (OC-SVM) to
discriminate different health conditions using damage sensitive features
extracted from VAE's signal reconstruction. The method is applied to a scale
steel structure that was tested in nine damage's scenarios by IASC-ASCE
Structural Health Monitoring Task Group
Deep Transfer Learning Applications in Intrusion Detection Systems: A Comprehensive Review
Globally, the external Internet is increasingly being connected to the
contemporary industrial control system. As a result, there is an immediate need
to protect the network from several threats. The key infrastructure of
industrial activity may be protected from harm by using an intrusion detection
system (IDS), a preventive measure mechanism, to recognize new kinds of
dangerous threats and hostile activities. The most recent artificial
intelligence (AI) techniques used to create IDS in many kinds of industrial
control networks are examined in this study, with a particular emphasis on
IDS-based deep transfer learning (DTL). This latter can be seen as a type of
information fusion that merge, and/or adapt knowledge from multiple domains to
enhance the performance of the target task, particularly when the labeled data
in the target domain is scarce. Publications issued after 2015 were taken into
account. These selected publications were divided into three categories:
DTL-only and IDS-only are involved in the introduction and background, and
DTL-based IDS papers are involved in the core papers of this review.
Researchers will be able to have a better grasp of the current state of DTL
approaches used in IDS in many different types of networks by reading this
review paper. Other useful information, such as the datasets used, the sort of
DTL employed, the pre-trained network, IDS techniques, the evaluation metrics
including accuracy/F-score and false alarm rate (FAR), and the improvement
gained, were also covered. The algorithms, and methods used in several studies,
or illustrate deeply and clearly the principle in any DTL-based IDS subcategory
are presented to the reader
Adapter Learning in Pretrained Feature Extractor for Continual Learning of Diseases
Currently intelligent diagnosis systems lack the ability of continually
learning to diagnose new diseases once deployed, under the condition of
preserving old disease knowledge. In particular, updating an intelligent
diagnosis system with training data of new diseases would cause catastrophic
forgetting of old disease knowledge. To address the catastrophic forgetting
issue, a novel adapter-based strategy is proposed to help effectively learn a
set of new diseases at each round (or task) of continual learning, without
changing the shared feature extractor. The learnable lightweight task-specific
adapter(s) can be flexibly designed (e.g., two convolutional layers) and then
added to the pretrained and fixed feature extractor. Together with a specially
designed task-specific head which absorbs all previously learned old diseases
as a single 'out-of-distribution' category, task-specific adapter(s) can help
the pretrained feature extractor more effectively extract discriminative
features between diseases. In addition, a simple yet effective fine-tuning is
applied to collaboratively fine-tune multiple task-specific heads such that
outputs from different heads are comparable and consequently the appropriate
classifier head can be more accurately selected during model inference.
Extensive empirical evaluations on three image datasets demonstrate the
superior performance of the proposed method in continual learning of new
diseases. The source code will be released publicly.Comment: 10 page
Développement d’un système intelligent de reconnaissance automatisée pour la caractérisation des états de surface de la chaussée en temps réel par une approche multicapteurs
Le rôle d’un service dédié à l’analyse de la météo routière est d’émettre des prévisions et des avertissements aux usagers quant à l’état de la chaussée, permettant ainsi d’anticiper les conditions de circulations dangereuses, notamment en période hivernale. Il est donc important de définir l’état de chaussée en tout temps. L’objectif de ce projet est donc de développer un système de détection multicapteurs automatisée pour la caractérisation en temps réel des états de surface de la chaussée (neige, glace, humide, sec). Ce mémoire se focalise donc sur le développement d’une méthode de fusion de données images et sons par apprentissage profond basée sur la théorie de Dempster-Shafer. Les mesures directes pour l’acquisition des données qui ont servi à l’entrainement du modèle de fusion ont été effectuées à l’aide de deux capteurs à faible coût disponibles dans le commerce. Le premier capteur est une caméra pour enregistrer des vidéos de la surface de la route. Le second capteur est un microphone pour enregistrer le bruit de l’interaction pneu-chaussée qui caractérise chaque état de surface. La finalité de ce système est de pouvoir fonctionner sur un nano-ordinateur pour l’acquisition, le traitement et la diffusion de l’information en temps réel afin d’avertir les services d’entretien routier ainsi que les usagers de la route. De façon précise, le système se présente comme suit :1) une architecture d’apprentissage profond classifiant chaque état de surface à partir des images issues de la vidéo sous forme de probabilités ; 2) une architecture d’apprentissage profond classifiant chaque état de surface à partir du son sous forme de probabilités ; 3) les probabilités issues de chaque architecture ont été ensuite introduites dans le modèle de fusion pour obtenir la décision finale. Afin que le système soit léger et moins coûteux, il a été développé à partir d’architectures alliant légèreté et précision à savoir Squeeznet pour les images et M5 pour le son. Lors de la validation, le système a démontré une bonne performance pour la détection des états surface avec notamment 87,9 % pour la glace noire et 97 % pour la neige fondante
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