On the Synergistic Use of Optical and SAR Time-Series Satellite Data for Small Mammal Disease Host Mapping

International audience(1) Background: Echinococcus multilocularis (Em), a highly pathogenic parasitic tapeworm, is responsible for a significant burden of human disease. In this study, optical and time-series Synthetic Aperture Radar (SAR) data is used synergistically to model key land cover characteristics driving the spatial distributions of two small mammal intermediate host species, Ellobius tancrei and Microtus gregalis, which facilitate Em transmission in a highly endemic area of Kyrgyzstan. (2) Methods: A series of land cover maps are derived from (a) single-date Landsat Operational Land Imager (OLI) imagery, (b) time-series Sentinel-1 SAR data, and (c) Landsat OLI and time-series Sentinel-1 SAR data in combination. Small mammal distributions are analyzed in relation to the surrounding land cover class coverage using random forests, before being applied predictively over broader areas. A comparison of models derived from the three land cover maps are made, assessing their potential for use in cloud-prone areas. (3) Results: Classification accuracies demonstrated the combined OLI-SAR classification to be of highest accuracy, with the single-date OLI and time-series SAR derived classifications of equivalent quality. Random forest analysis identified statistically significant positive relationships between E. tancrei density and agricultural land, and between M. gregalis density and water and bushes. Predictive application of random forest models identified hotspots of high relative density of E. tancrei and M. gregalis across the broader study area. (4) Conclusions: This offers valuable information to improve the targeting of limited-resource disease control activities to disrupt disease transmission in this area. Time-series SAR derived land cover maps are shown to be of equivalent quality to those generated from single-date optical imagery, which enables application of these methods in cloud-affected areas where, previously, this was not possible due to the sparsity of cloud-free optical imagery

Mapping Natural Forest Remnants with Multi-Source and Multi-Temporal Remote Sensing Data for More Informed Management of Global Biodiversity Hotspots

Global terrestrial biodiversity hotspots (GBH) represent areas featuring exceptional concentrations of endemism and habitat loss in the world. Unfortunately, geospatial data of natural habitats of the GBHs are often outdated, imprecise, and coarse, and need updating for improved management and protection actions. Recent developments in satellite image availability, combined with enhanced machine learning algorithms and computing capacity, enable cost-efficient updating of geospatial information of these already severely fragmented habitats. This study aimed to develop a more accurate method for mapping closed canopy evergreen natural forest (CCEF) of the Eastern Arc Mountains (EAM) ecoregion in Tanzania and Kenya, and to update the knowledge on its spatial extent, level of fragmentation, and conservation status. We tested 1023 model possibilities stemming from a combination of Sentinel-1 (S1) and Sentinel-2 (S2) satellite imagery, spatial texture of S1 and S2, seasonality derived from Landsat-8 time series, and topographic information, using random forest modelling approach. We compared the best CCEF model with existing spatial forest products from the EAM through independent accuracy assessment. Finally, the CCEF model was used to estimate the fragmentation and conservation coverage of the EAM. The CCEF model has moderate accuracy measured in True Skill Statistic (0.57), and it clearly outperforms other similar products from the region. Based on this model, there are about 296,000 ha of Eastern Arc Forests (EAF) left. Furthermore, acknowledging small forest fragments (1-10 ha) implies that the EAFs are more fragmented than previously considered. Currently, the official protection of EAFs is disproportionally targeting well-studied mountain blocks, while less known areas and small fragments are underrepresented in the protected area network. Thus, the generated CCEF model should be used to design updates and more informed and detailed conservation allocation plans to balance this situation. The results highlight that spatial texture of S2, seasonality, and topography are the most important variables describing the EAFs, while spatial texture of S1 increases the model performance slightly. All in all, our work demonstrates that recent developments in Earth observation allows significant enhancements in mapping, which should be utilized in areas with outstanding biodiversity values for better forest and conservation planning.Peer reviewe

Applications of Satellite Earth Observations section - NEODAAS: Providing satellite data for efficient research

The NERC Earth Observation Data Acquisition and Analysis Service (NEODAAS) provides a central point of Earth Observation (EO) satellite data access and expertise for UK researchers. The service is tailored to individual users’ requirements to ensure that researchers can focus effort on their science, rather than struggling with correct use of unfamiliar satellite data

Satellite monitoring of harmful algal blooms (HABs) to protect the aquaculture industry

Harmful algal blooms (HABs) can cause sudden and considerable losses to fish farms, for example 500,000 salmon during one bloom in Shetland, and also present a threat to human health. Early warning allows the industry to take protective measures. PML's satellite monitoring of HABs is now funded by the Scottish aquaculture industry. The service involves processing EO ocean colour data from NASA and ESA in near-real time, and applying novel techniques for discriminating certain harmful blooms from harmless algae. Within the AQUA-USERS project we are extending this capability to further HAB species within several European countries

Mapping Natural Forest Remnants with Multi-Source and Multi-Temporal Remote Sensing Data for More Informed Management of Global Biodiversity Hotspots

Global terrestrial biodiversity hotspots (GBH) represent areas featuring exceptional concentrations of endemism and habitat loss in the world. Unfortunately, geospatial data of natural habitats of the GBHs are often outdated, imprecise, and coarse, and need updating for improved management and protection actions. Recent developments in satellite image availability, combined with enhanced machine learning algorithms and computing capacity, enable cost-efficient updating of geospatial information of these already severely fragmented habitats. This study aimed to develop a more accurate method for mapping closed canopy evergreen natural forest (CCEF) of the Eastern Arc Mountains (EAM) ecoregion in Tanzania and Kenya, and to update the knowledge on its spatial extent, level of fragmentation, and conservation status. We tested 1023 model possibilities stemming from a combination of Sentinel-1 (S1) and Sentinel-2 (S2) satellite imagery, spatial texture of S1 and S2, seasonality derived from Landsat-8 time series, and topographic information, using random forest modelling approach. We compared the best CCEF model with existing spatial forest products from the EAM through independent accuracy assessment. Finally, the CCEF model was used to estimate the fragmentation and conservation coverage of the EAM. The CCEF model has moderate accuracy measured in True Skill Statistic (0.57), and it clearly outperforms other similar products from the region. Based on this model, there are about 296,000 ha of Eastern Arc Forests (EAF) left. Furthermore, acknowledging small forest fragments (1–10 ha) implies that the EAFs are more fragmented than previously considered. Currently, the official protection of EAFs is disproportionally targeting well-studied mountain blocks, while less known areas and small fragments are underrepresented in the protected area network. Thus, the generated CCEF model should be used to design updates and more informed and detailed conservation allocation plans to balance this situation. The results highlight that spatial texture of S2, seasonality, and topography are the most important variables describing the EAFs, while spatial texture of S1 increases the model performance slightly. All in all, our work demonstrates that recent developments in Earth observation allows significant enhancements in mapping, which should be utilized in areas with outstanding biodiversity values for better forest and conservation planning.</p

Developing the role of Earth observation in spatio-temporal mosquito modelling to identify malaria hot-spots

Anopheles mosquitoes are the vectors of human malaria, a disease responsible for a significant burden of global disease and over half a million deaths in 2020. Here, methods using a time series of cost-free Earth Observation (EO) data, 45,844 in situ mosquito monitoring captures, and the cloud processing platform Google Earth Engine are developed to identify the biogeographical variables driving the abundance and distribution of three malaria vectors—Anopheles gambiae s.l., An. funestus, and An. paludis—in two highly endemic areas in the Democratic Republic of the Congo. EO-derived topographical and time series land surface temperature and rainfall data sets are analysed using Random Forests (RFs) to identify their relative importance in relation to the abundance of the three mosquito species, and they show how spatial and temporal distributions vary by site, by mosquito species, and by month. The observed relationships differed between species and study areas, with the overall number of biogeographical variables identified as important in relation to species abundance, being 30 for An. gambiae s.l. and An. funestus and 26 for An. paludis. Results indicate rainfall and land surface temperature to consistently be the variables of highest importance, with higher rainfall resulting in greater mosquito abundance through the creation of pools acting as mosquito larval habitats; however, proportional coverage of forest and grassland, as well as proximity to forests, are also consistently identified as important. Predictive application of the RF models generated monthly abundance maps for each species, identifying both spatial and temporal hot-spots of high abundance and, by proxy, increased malaria infection risk. Results indicate greater temporal variability in An. gambiae s.l. and An. paludis abundances in response to seasonal rainfall, whereas An. funestus is generally more temporally stable, with maximum predicted abundances of 122 for An. gambiae s.l., 283 for An. funestus, and 120 for An. paludis. Model validation produced R2 values of 0.717 for An. gambiae s.l., 0.861 for An. funestus, and 0.448 for An. paludis. Monthly abundance values were extracted for 248,089 individual buildings, demonstrating how species abundance, and therefore biting pressure, varies spatially and seasonally on a building-to-building basis. These methods advance previous broader regional mosquito mapping and can provide a crucial tool for designing bespoke control programs and for improving the targeting of resource-constrained disease control activities to reduce malaria transmission and subsequent mortality in endemic regions, in line with the WHO’s ‘High Burden to High Impact’ initiative. The developed method was designed to be widely applicable to other areas, where suitable in situ mosquito monitoring data are available. Training materials were also made freely available in multiple languages, enabling wider uptake and implementation of the methods by users without requiring prior expertise in EO

Producing context specific land cover and land use maps of human-modified tropical forest landscapes for infectious disease applications

Satellite-based land cover mapping plays an important role in understanding changes in ecosystems and biodiversity. There are global land cover products available, however for region specific studies of drivers of infectious disease patterns, these can lack the spatial and thematic detail or accuracy required to capture key ecological processes. To overcome this, we produced our own Landsat derived 30 m maps for three districts in India's Western Ghats (Wayanad, Shivamogga and Sindhudurg). The maps locate natural vegetation types, plantation types, agricultural areas, water bodies and settlements in the landscape, all relevant to functional resource use of species involved in infectious disease dynamics. The maps represent the mode of 50 classification iterations and include a spatial measure of class stability derived from these iterations. Overall accuracies for Wayanad, Shivamogga and Sindhudurg are 94.7 % (SE 1.2 %), 88.9 % (SE 1.2 %) and 88.8 % (SE 2 %) respectively. Class classification stability was high across all three districts and the individual classes that matter for defining key interfaces between human habitation, forests, crop, and plantation cultivation, were generally well separated. A comparison with the 300 m global ESA CCI land cover map highlights lower ESA CCI class accuracies and the importance of increased spatial resolution when dealing with complex landscape mosaics. A comparison with the 30 m Global Forest Change product reveals an accurate mapping of forest loss and different dynamics between districts (i.e., Forests lost to Built-up versus Forests lost to Plantations), demonstrating an interesting complementarity between our maps and the % tree cover Global Forest Change product. When studying infectious disease responses to land use change in tropical forest ecosystems, we recommend using bespoke land cover/use classifications reflecting functional resource use by relevant vectors, reservoirs, and people. Alternatively, global products should be carefully validated with ground reference points representing locally relevant habitats. [Abstract copyright: Copyright © 2023 The Authors. Published by Elsevier B.V. All rights reserved.

Earth Resources: A continuing bibliography with indexes, issue 5, October 1975

This bibliography lists 601 reports, articles, and other documents introduced into the NASA scientific and technical information system between January 1975 and March 1975. Emphasis is placed on the use of remote sensing and geophysical instrumentation in spacecraft and aircraft to survey and inventory natural resources and urban areas. Subject matter is grouped according to agriculture and forestry, environmental changes and cultural resources, geodesy and cartography, geology and mineral resources, hydrology and water management, data processing and distribution systems, instrumentation and sensors, and economic analysis

Remote Sensing of Plant Biodiversity

This Open Access volume aims to methodologically improve our understanding of biodiversity by linking disciplines that incorporate remote sensing, and uniting data and perspectives in the fields of biology, landscape ecology, and geography. The book provides a framework for how biodiversity can be detected and evaluated—focusing particularly on plants—using proximal and remotely sensed hyperspectral data and other tools such as LiDAR. The volume, whose chapters bring together a large cross-section of the biodiversity community engaged in these methods, attempts to establish a common language across disciplines for understanding and implementing remote sensing of biodiversity across scales. The first part of the book offers a potential basis for remote detection of biodiversity. An overview of the nature of biodiversity is described, along with ways for determining traits of plant biodiversity through spectral analyses across spatial scales and linking spectral data to the tree of life. The second part details what can be detected spectrally and remotely. Specific instrumentation and technologies are described, as well as the technical challenges of detection and data synthesis, collection and processing. The third part discusses spatial resolution and integration across scales and ends with a vision for developing a global biodiversity monitoring system. Topics include spectral and functional variation across habitats and biomes, biodiversity variables for global scale assessment, and the prospects and pitfalls in remote sensing of biodiversity at the global scale

The global tree carrying capacity (keynote)

editorial reviewe