Degree correlations in scale-free null models

We study the average nearest neighbor degree $a(k)$ of vertices with degree $k$. In many real-world networks with power-law degree distribution $a(k)$ falls off in $k$, a property ascribed to the constraint that any two vertices are connected by at most one edge. We show that $a(k)$ indeed decays in $k$ in three simple random graph null models with power-law degrees: the erased configuration model, the rank-1 inhomogeneous random graph and the hyperbolic random graph. We consider the large-network limit when the number of nodes $n$ tends to infinity. We find for all three null models that $a(k)$ starts to decay beyond $n^{(\tau-2)/(\tau-1)}$ and then settles on a power law $a(k)\sim k^{\tau-3}$, with $\tau$ the degree exponent.Comment: 21 pages, 4 figure

Superdiffusion in a class of networks with marginal long-range connections

A class of cubic networks composed of a regular one-dimensional lattice and a set of long-range links is introduced. Networks parametrized by a positive integer k are constructed by starting from a one-dimensional lattice and iteratively connecting each site of degree 2 with a $k$th neighboring site of degree 2. Specifying the way pairs of sites to be connected are selected, various random and regular networks are defined, all of which have a power-law edge-length distribution of the form $P_>(l)\sim l^{-s}$ with the marginal exponent s=1. In all these networks, lengths of shortest paths grow as a power of the distance and random walk is super-diffusive. Applying a renormalization group method, the corresponding shortest-path dimensions and random-walk dimensions are calculated exactly for k=1 networks and for k=2 regular networks; in other cases, they are estimated by numerical methods. Although, s=1 holds for all representatives of this class, the above quantities are found to depend on the details of the structure of networks controlled by k and other parameters.Comment: 10 pages, 9 figure

Biological network comparison using graphlet degree distribution

Analogous to biological sequence comparison, comparing cellular networks is an important problem that could provide insight into biological understanding and therapeutics. For technical reasons, comparing large networks is computationally infeasible, and thus heuristics such as the degree distribution have been sought. It is easy to demonstrate that two networks are different by simply showing a short list of properties in which they differ. It is much harder to show that two networks are similar, as it requires demonstrating their similarity in all of their exponentially many properties. Clearly, it is computationally prohibitive to analyze all network properties, but the larger the number of constraints we impose in determining network similarity, the more likely it is that the networks will truly be similar. We introduce a new systematic measure of a network's local structure that imposes a large number of similarity constraints on networks being compared. In particular, we generalize the degree distribution, which measures the number of nodes 'touching' k edges, into distributions measuring the number of nodes 'touching' k graphlets, where graphlets are small connected non-isomorphic subgraphs of a large network. Our new measure of network local structure consists of 73 graphlet degree distributions (GDDs) of graphlets with 2-5 nodes, but it is easily extendible to a greater number of constraints (i.e. graphlets). Furthermore, we show a way to combine the 73 GDDs into a network 'agreement' measure. Based on this new network agreement measure, we show that almost all of the 14 eukaryotic PPI networks, including human, are better modeled by geometric random graphs than by Erdos-Reny, random scale-free, or Barabasi-Albert scale-free networks.Comment: Proceedings of the 2006 European Conference on Computational Biology, ECCB'06, Eilat, Israel, January 21-24, 200

Leaders of neuronal cultures in a quorum percolation model

We present a theoretical framework using quorum-percolation for describing the initiation of activity in a neural culture. The cultures are modeled as random graphs, whose nodes are excitatory neurons with kin inputs and kout outputs, and whose input degrees kin = k obey given distribution functions pk. We examine the firing activity of the population of neurons according to their input degree (k) classes and calculate for each class its firing probability \Phi_k(t) as a function of t. The probability of a node to fire is found to be determined by its in-degree k, and the first-to-fire neurons are those that have a high k. A small minority of high-k classes may be called "Leaders", as they form an inter-connected subnetwork that consistently fires much before the rest of the culture. Once initiated, the activity spreads from the Leaders to the less connected majority of the culture. We then use the distribution of in-degree of the Leaders to study the growth rate of the number of neurons active in a burst, which was experimentally measured to be initially exponential. We find that this kind of growth rate is best described by a population that has an in-degree distribution that is a Gaussian centered around k = 75 with width {\sigma} = 31 for the majority of the neurons, but also has a power law tail with exponent -2 for ten percent of the population. Neurons in the tail may have as many as k = 4, 700 inputs. We explore and discuss the correspondence between the degree distribution and a dynamic neuronal threshold, showing that from the functional point of view, structure and elementary dynamics are interchangeable. We discuss possible geometric origins of this distribution, and comment on the importance of size, or of having a large number of neurons, in the culture.Comment: Keywords: Neuronal cultures, Graph theory, Activation dynamics, Percolation, Statistical mechanics of networks, Leaders of activity, Quorum. http://www.weizmann.ac.il/complex/tlusty/papers/FrontCompNeuro2010.pd

Degree distributions in AB random geometric graphs

In this paper, we provide degree distributions for $AB$ random geometric graphs, in which points of type $A$ connect to the closest $k$ points of type $B$. The motivating example to derive such degree distributions is in 5G wireless networks with multi-connectivity, where users connect to their closest $k$ base stations. It is important to know how many users a particular base station serves, which gives the degree of that base station. To obtain these degree distributions, we investigate the distribution of area sizes of the $k-$th order Voronoi cells of $B$-points. Assuming that the $A$-points are Poisson distributed, we investigate the amount of users connected to a certain $B$-point, which is equal to the degree of this point. In the simple case where the $B$-points are placed in an hexagonal grid, we show that all $k$-th order Voronoi areas are equal and thus all degrees follow a Poisson distribution. However, this observation does not hold for Poisson distributed $B$-points, for which we show that the degree distribution follows a compound Poisson-Erlang distribution in the 1-dimensional case. We then approximate the degree distribution in the 2-dimensional case with a compound Poisson-Gamma degree distribution and show that this one-parameter fit performs well for different values of $k$. Moreover, we show that for increasing $k$, these degree distributions become more concentrated around the mean. This means that $k$-connected $AB$ random graphs balance the loads of $B$-type nodes more evenly as $k$ increases. Finally, we provide a case study on real data of base stations. We show that with little shadowing in the distances between users and base stations, the Poisson distribution does not capture the degree distribution of these data, especially for $k>1$. However, under strong shadowing, our degree approximations perform quite good even for these non-Poissonian location data.Comment: 23 pages, 13 figure

Inducing Effect on the Percolation Transition in Complex Networks

Percolation theory concerns the emergence of connected clusters that percolate through a networked system. Previous studies ignored the effect that a node outside the percolating cluster may actively induce its inside neighbours to exit the percolating cluster. Here we study this inducing effect on the classical site percolation and K-core percolation, showing that the inducing effect always causes a discontinuous percolation transition. We precisely predict the percolation threshold and core size for uncorrelated random networks with arbitrary degree distributions. For low-dimensional lattices the percolation threshold fluctuates considerably over realizations, yet we can still predict the core size once the percolation occurs. The core sizes of real-world networks can also be well predicted using degree distribution as the only input. Our work therefore provides a theoretical framework for quantitatively understanding discontinuous breakdown phenomena in various complex systems.Comment: Main text and appendices. Title has been change