Percolation-like Scaling Exponents for Minimal Paths and Trees in the Stochastic Mean Field Model

In the mean field (or random link) model there are $n$ points and inter-point distances are independent random variables. For $0 < \ell < \infty$ and in the $n \to \infty$ limit, let $\delta(\ell) = 1/n \times$ (maximum number of steps in a path whose average step-length is $\leq \ell$). The function $\delta(\ell)$ is analogous to the percolation function in percolation theory: there is a critical value $\ell_* = e^{-1}$ at which $\delta(\cdot)$ becomes non-zero, and (presumably) a scaling exponent $\beta$ in the sense $\delta(\ell) \asymp (\ell - \ell_*)^\beta$. Recently developed probabilistic methodology (in some sense a rephrasing of the cavity method of Mezard-Parisi) provides a simple albeit non-rigorous way of writing down such functions in terms of solutions of fixed-point equations for probability distributions. Solving numerically gives convincing evidence that $\beta = 3$. A parallel study with trees instead of paths gives scaling exponent $\beta = 2$. The new exponents coincide with those found in a different context (comparing optimal and near-optimal solutions of mean-field TSP and MST) and reinforce the suggestion that these scaling exponents determine universality classes for optimization problems on random points.Comment: 19 page

A survey of max-type recursive distributional equations

In certain problems in a variety of applied probability settings (from probabilistic analysis of algorithms to statistical physics), the central requirement is to solve a recursive distributional equation of the form X =^d g((\xi_i,X_i),i\geq 1). Here (\xi_i) and g(\cdot) are given and the X_i are independent copies of the unknown distribution X. We survey this area, emphasizing examples where the function g(\cdot) is essentially a ``maximum'' or ``minimum'' function. We draw attention to the theoretical question of endogeny: in the associated recursive tree process X_i, are the X_i measurable functions of the innovations process (\xi_i)?Comment: Published at http://dx.doi.org/10.1214/105051605000000142 in the Annals of Applied Probability (http://www.imstat.org/aap/) by the Institute of Mathematical Statistics (http://www.imstat.org

A review of Monte Carlo simulations of polymers with PERM

In this review, we describe applications of the pruned-enriched Rosenbluth method (PERM), a sequential Monte Carlo algorithm with resampling, to various problems in polymer physics. PERM produces samples according to any given prescribed weight distribution, by growing configurations step by step with controlled bias, and correcting "bad" configurations by "population control". The latter is implemented, in contrast to other population based algorithms like e.g. genetic algorithms, by depth-first recursion which avoids storing all members of the population at the same time in computer memory. The problems we discuss all concern single polymers (with one exception), but under various conditions: Homopolymers in good solvents and at the $\Theta$ point, semi-stiff polymers, polymers in confining geometries, stretched polymers undergoing a forced globule-linear transition, star polymers, bottle brushes, lattice animals as a model for randomly branched polymers, DNA melting, and finally -- as the only system at low temperatures, lattice heteropolymers as simple models for protein folding. PERM is for some of these problems the method of choice, but it can also fail. We discuss how to recognize when a result is reliable, and we discuss also some types of bias that can be crucial in guiding the growth into the right directions.Comment: 29 pages, 26 figures, to be published in J. Stat. Phys. (2011

Critical phenomena in complex networks

The combination of the compactness of networks, featuring small diameters, and their complex architectures results in a variety of critical effects dramatically different from those in cooperative systems on lattices. In the last few years, researchers have made important steps toward understanding the qualitatively new critical phenomena in complex networks. We review the results, concepts, and methods of this rapidly developing field. Here we mostly consider two closely related classes of these critical phenomena, namely structural phase transitions in the network architectures and transitions in cooperative models on networks as substrates. We also discuss systems where a network and interacting agents on it influence each other. We overview a wide range of critical phenomena in equilibrium and growing networks including the birth of the giant connected component, percolation, k-core percolation, phenomena near epidemic thresholds, condensation transitions, critical phenomena in spin models placed on networks, synchronization, and self-organized criticality effects in interacting systems on networks. We also discuss strong finite size effects in these systems and highlight open problems and perspectives.Comment: Review article, 79 pages, 43 figures, 1 table, 508 references, extende

Slow dynamics and rare-region effects in the contact process on weighted tree networks

We show that generic, slow dynamics can occur in the contact process on complex networks with a tree-like structure and a superimposed weight pattern, in the absence of additional (non-topological) sources of quenched disorder. The slow dynamics is induced by rare-region effects occurring on correlated subspaces of vertices connected by large weight edges, and manifests in the form of a smeared phase transition. We conjecture that more sophisticated network motifs could be able to induce Griffiths phases, as a consequence of purely topological disorder.Comment: 12 pages, 10 figures, final version appeared in PR

Griffiths phases and localization in hierarchical modular networks

We study variants of hierarchical modular network models suggested by Kaiser and Hilgetag [Frontiers in Neuroinformatics, 4 (2010) 8] to model functional brain connectivity, using extensive simulations and quenched mean-field theory (QMF), focusing on structures with a connection probability that decays exponentially with the level index. Such networks can be embedded in two-dimensional Euclidean space. We explore the dynamic behavior of the contact process (CP) and threshold models on networks of this kind, including hierarchical trees. While in the small-world networks originally proposed to model brain connectivity, the topological heterogeneities are not strong enough to induce deviations from mean-field behavior, we show that a Griffiths phase can emerge under reduced connection probabilities, approaching the percolation threshold. In this case the topological dimension of the networks is finite, and extended regions of bursty, power-law dynamics are observed. Localization in the steady state is also shown via QMF. We investigate the effects of link asymmetry and coupling disorder, and show that localization can occur even in small-world networks with high connectivity in case of link disorder.Comment: 18 pages, 20 figures, accepted version in Scientific Report