The Matching Problem in General Graphs is in Quasi-NC

We show that the perfect matching problem in general graphs is in Quasi-NC. That is, we give a deterministic parallel algorithm which runs in $O(\log^3 n)$ time on $n^{O(\log^2 n)}$ processors. The result is obtained by a derandomization of the Isolation Lemma for perfect matchings, which was introduced in the classic paper by Mulmuley, Vazirani and Vazirani [1987] to obtain a Randomized NC algorithm. Our proof extends the framework of Fenner, Gurjar and Thierauf [2016], who proved the analogous result in the special case of bipartite graphs. Compared to that setting, several new ingredients are needed due to the significantly more complex structure of perfect matchings in general graphs. In particular, our proof heavily relies on the laminar structure of the faces of the perfect matching polytope.Comment: Accepted to FOCS 2017 (58th Annual IEEE Symposium on Foundations of Computer Science

Pure Parsimony Xor Haplotyping

The haplotype resolution from xor-genotype data has been recently formulated as a new model for genetic studies. The xor-genotype data is a cheaply obtainable type of data distinguishing heterozygous from homozygous sites without identifying the homozygous alleles. In this paper we propose a formulation based on a well-known model used in haplotype inference: pure parsimony. We exhibit exact solutions of the problem by providing polynomial time algorithms for some restricted cases and a fixed-parameter algorithm for the general case. These results are based on some interesting combinatorial properties of a graph representation of the solutions. Furthermore, we show that the problem has a polynomial time k-approximation, where k is the maximum number of xor-genotypes containing a given SNP. Finally, we propose a heuristic and produce an experimental analysis showing that it scales to real-world large instances taken from the HapMap project

A Breezing Proof of the KMW Bound

In their seminal paper from 2004, Kuhn, Moscibroda, and Wattenhofer (KMW) proved a hardness result for several fundamental graph problems in the LOCAL model: For any (randomized) algorithm, there are input graphs with $n$ nodes and maximum degree $\Delta$ on which $\Omega(\min\{\sqrt{\log n/\log \log n},\log \Delta/\log \log \Delta\})$ (expected) communication rounds are required to obtain polylogarithmic approximations to a minimum vertex cover, minimum dominating set, or maximum matching. Via reduction, this hardness extends to symmetry breaking tasks like finding maximal independent sets or maximal matchings. Today, more than $15$ years later, there is still no proof of this result that is easy on the reader. Setting out to change this, in this work, we provide a fully self-contained and $\mathit{simple}$ proof of the KMW lower bound. The key argument is algorithmic, and it relies on an invariant that can be readily verified from the generation rules of the lower bound graphs.Comment: 21 pages, 6 figure

Cover-Encodings of Fitness Landscapes

The traditional way of tackling discrete optimization problems is by using local search on suitably defined cost or fitness landscapes. Such approaches are however limited by the slowing down that occurs when the local minima that are a feature of the typically rugged landscapes encountered arrest the progress of the search process. Another way of tackling optimization problems is by the use of heuristic approximations to estimate a global cost minimum. Here we present a combination of these two approaches by using cover-encoding maps which map processes from a larger search space to subsets of the original search space. The key idea is to construct cover-encoding maps with the help of suitable heuristics that single out near-optimal solutions and result in landscapes on the larger search space that no longer exhibit trapping local minima. We present cover-encoding maps for the problems of the traveling salesman, number partitioning, maximum matching and maximum clique; the practical feasibility of our method is demonstrated by simulations of adaptive walks on the corresponding encoded landscapes which find the global minima for these problems.Comment: 15 pages, 4 figure

On Approximating Restricted Cycle Covers

A cycle cover of a graph is a set of cycles such that every vertex is part of exactly one cycle. An L-cycle cover is a cycle cover in which the length of every cycle is in the set L. The weight of a cycle cover of an edge-weighted graph is the sum of the weights of its edges. We come close to settling the complexity and approximability of computing L-cycle covers. On the one hand, we show that for almost all L, computing L-cycle covers of maximum weight in directed and undirected graphs is APX-hard and NP-hard. Most of our hardness results hold even if the edge weights are restricted to zero and one. On the other hand, we show that the problem of computing L-cycle covers of maximum weight can be approximated within a factor of 2 for undirected graphs and within a factor of 8/3 in the case of directed graphs. This holds for arbitrary sets L.Comment: To appear in SIAM Journal on Computing. Minor change