Modelling and in vitro testing of the HIV-1 Nef fitness landscape.

An effective vaccine is urgently required to curb the HIV-1 epidemic. We have previously described an approach to model the fitness landscape of several HIV-1 proteins, and have validated the results against experimental and clinical data. The fitness landscape may be used to identify mutation patterns harmful to virus viability, and consequently inform the design of immunogens that can target such regions for immunological control. Here we apply such an analysis and complementary experiments to HIV-1 Nef, a multifunctional protein which plays a key role in HIV-1 pathogenesis. We measured Nef-driven replication capacities as well as Nef-mediated CD4 and HLA-I down-modulation capacities of thirty-two different Nef mutants, and tested model predictions against these results. Furthermore, we evaluated the models using 448 patient-derived Nef sequences for which several Nef activities were previously measured. Model predictions correlated significantly with Nef-driven replication and CD4 down-modulation capacities, but not HLA-I down-modulation capacities, of the various Nef mutants. Similarly, in our analysis of patient-derived Nef sequences, CD4 down-modulation capacity correlated the most significantly with model predictions, suggesting that of the tested Nef functions, this is the most important in vivo. Overall, our results highlight how the fitness landscape inferred from patient-derived sequences captures, at least in part, the in vivo functional effects of mutations to Nef. However, the correlation between predictions of the fitness landscape and measured parameters of Nef function is not as accurate as the correlation observed in past studies for other proteins. This may be because of the additional complexity associated with inferring the cost of mutations on the diverse functions of Nef

Tools for Assessing Climate Impacts on Fish and Wildlife

Climate change is already affecting many fish and wildlife populations. Managing these populations requires an understanding of the nature, magnitude, and distribution of current and future climate impacts. Scientists and managers have at their disposal a wide array of models for projecting climate impacts that can be used to build such an understanding. Here, we provide a broad overview of the types of models available for forecasting the effects of climate change on key processes that affect fish and wildlife habitat (hydrology, fire, and vegetation), as well as on individual species distributions and populations. We present a framework for how climate-impacts modeling can be used to address management concerns, providing examples of model-based assessments of climate impacts on salmon populations in the Pacific Northwest, fire regimes in the boreal region of Canada, prairies and savannas in the Willamette Valley-Puget Sound Trough-Georgia Basin ecoregion, and marten Martes americana populations in the northeastern United States and southeastern Canada. We also highlight some key limitations of these models and discuss how such limitations should be managed. We conclude with a general discussion of how these models can be integrated into fish and wildlife management

The potential role of Open Educational Practice Policy in transforming Australian Higher Education

Open Educational Practices (OEP) have played an important role in assisting educational institutions and governments worldwide to meet their current and future educational targets in widening participation, lowering costs, improving the quality of learning and teaching and promoting social inclusion and participatory democracy. There have been some important OEP developments in Australia, but unfortunately the potential of OEP to meet some of the national educational targets has not been fully realised and acknowledged yet, in ways that many countries around the world have. This paper will gather, discuss, and analyse some key national and international policies and documentation available as an attempt to provide a solid foundation for a call to action for OEP in Australia, which will hopefully be an instrument to assist and connect practitioners and policy makers in higher education

Exploring the invasion of rangelands by Acacia mearnsii (black wattle): biophysical characteristics and management implications

Australian acacias have spread to many parts of the world. In South Africa, species such as A. mearnsii and A. dealbata are invasive. Consequently, more effort has focused on their clearing. In a context of increasing clearing costs, it is crucial to develop innovative ways of managing invasions. Our aim was to understand the biophysical properties of A. mearnsii in grasslands as they relate to grass production and to explore management implications. Aboveground biomass (AGB) of A. mearnsii was determined using a published allometric equation in invaded grasslands of the northern Eastern Cape, South Africa. The relationships among the A. mearnsii leaf area index (LAI), normalised difference vegetation index (NDVI) and AGB were investigated. The influence of A. mearnsii LAI and terrain slope on grass cover was also investigated. Strong linear relationships between NDVI, LAI and AGB were developed. Acacia mearnsii canopy adversely impacted grass production more than terrain slope (p < 0.05) and when LAI approached 2.1, grass cover dropped to below 10% in infested areas. Reducing A. mearnsii canopy could promote grass production while encouraging carbon sequestration. Given the high AGB and clearing costs, it may be prudent to adopt the ‘novel ecosystems’ approach in managing infested landscapes.Keywords: grassland, invasive plants, landscape ecology, rangeland conditio

Building a Campaign for Reading Reform in Miami

Presents a case study of community organizing for school reform by Miami's People Acting for Community Together: how its campaign for a new literacy program shaped leadership development, district-level policy, school-level capacity, and student outcomes