16 research outputs found
Computational Analysis of Fundus Images: Rule-Based and Scale-Space Models
Fundus images are one of the most important imaging examinations in modern ophthalmology
because they are simple, inexpensive and, above all, noninvasive.
Nowadays, the acquisition and
storage of highresolution
fundus images is relatively easy and fast. Therefore, fundus imaging
has become a fundamental investigation in retinal lesion detection, ocular health monitoring and
screening programmes. Given the large volume and clinical complexity associated with these images,
their analysis and interpretation by trained clinicians becomes a timeconsuming
task and is
prone to human error. Therefore, there is a growing interest in developing automated approaches
that are affordable and have high sensitivity and specificity. These automated approaches need to
be robust if they are to be used in the general population to diagnose and track retinal diseases. To
be effective, the automated systems must be able to recognize normal structures and distinguish
them from pathological clinical manifestations.
The main objective of the research leading to this thesis was to develop automated systems capable
of recognizing and segmenting retinal anatomical structures and retinal pathological clinical
manifestations associated with the most common retinal diseases. In particular, these automated
algorithms were developed on the premise of robustness and efficiency to deal with the difficulties
and complexity inherent in these images. Four objectives were considered in the analysis of
fundus images. Segmentation of exudates, localization of the optic disc, detection of the midline
of blood vessels, segmentation of the vascular network and detection of microaneurysms.
In addition, we also evaluated the detection of diabetic retinopathy on fundus images using the
microaneurysm detection method. An overview of the state of the art is presented to compare the
performance of the developed approaches with the main methods described in the literature for
each of the previously described objectives. To facilitate the comparison of methods, the state of
the art has been divided into rulebased
methods and machine learningbased
methods.
In the research reported in this paper, rulebased
methods based on image processing methods
were preferred over machine learningbased
methods. In particular, scalespace
methods proved
to be effective in achieving the set goals.
Two different approaches to exudate segmentation were developed. The first approach is based on
scalespace
curvature in combination with the local maximum of a scalespace
blob detector and
dynamic thresholds. The second approach is based on the analysis of the distribution function of
the maximum values of the noise map in combination with morphological operators and adaptive
thresholds. Both approaches perform a correct segmentation of the exudates and cope well with
the uneven illumination and contrast variations in the fundus images.
Optic disc localization was achieved using a new technique called cumulative sum fields, which was
combined with a vascular enhancement method. The algorithm proved to be reliable and efficient,
especially for pathological images. The robustness of the method was tested on 8 datasets.
The detection of the midline of the blood vessels was achieved using a modified corner detector
in combination with binary philtres and dynamic thresholding. Segmentation of the vascular network
was achieved using a new scalespace
blood vessels enhancement method. The developed
methods have proven effective in detecting the midline of blood vessels and segmenting vascular
networks.
The microaneurysm detection method relies on a scalespace
microaneurysm detection and labelling
system. A new approach based on the neighbourhood of the microaneurysms was used
for labelling. Microaneurysm detection enabled the assessment of diabetic retinopathy detection.
The microaneurysm detection method proved to be competitive with other methods, especially with highresolution
images. Diabetic retinopathy detection with the developed microaneurysm
detection method showed similar performance to other methods and human experts.
The results of this work show that it is possible to develop reliable and robust scalespace
methods
that can detect various anatomical structures and pathological features of the retina. Furthermore,
the results obtained in this work show that although recent research has focused on machine learning
methods, scalespace
methods can achieve very competitive results and typically have greater
independence from image acquisition. The methods developed in this work may also be relevant
for the future definition of new descriptors and features that can significantly improve the results
of automated methods.As imagens do fundo do olho são hoje um dos principais exames imagiológicos da oftalmologia
moderna, pela sua simplicidade, baixo custo e acima de tudo pelo seu carácter nãoinvasivo.
A
aquisição e armazenamento de imagens do fundo do olho com alta resolução é também relativamente
simples e rápida. Desta forma, as imagens do fundo do olho são um exame fundamental
na identificação de alterações retinianas, monitorização da saúde ocular, e em programas de rastreio.
Considerando o elevado volume e complexidade clínica associada a estas imagens, a análise
e interpretação das mesmas por clínicos treinados tornase
uma tarefa morosa e propensa a erros
humanos. Assim, há um interesse crescente no desenvolvimento de abordagens automatizadas,
acessíveis em custo, e com uma alta sensibilidade e especificidade. Estas devem ser robustas para
serem aplicadas à população em geral no diagnóstico e seguimento de doenças retinianas. Para
serem eficazes, os sistemas de análise têm que conseguir detetar e distinguir estruturas normais
de sinais patológicos.
O objetivo principal da investigação que levou a esta tese de doutoramento é o desenvolvimento
de sistemas automáticos capazes de detetar e segmentar as estruturas anatómicas da retina, e os
sinais patológicos retinianos associados às doenças retinianas mais comuns. Em particular, estes
algoritmos automatizados foram desenvolvidos segundo as premissas de robustez e eficácia para
lidar com as dificuldades e complexidades inerentes a estas imagens.
Foram considerados quatro objetivos de análise de imagens do fundo do olho. São estes, a segmentação
de exsudados, a localização do disco ótico, a deteção da linha central venosa dos vasos
sanguíneos e segmentação da rede vascular, e a deteção de microaneurismas. De acrescentar que
usando o método de deteção de microaneurismas, avaliouse
também a capacidade de deteção da
retinopatia diabética em imagens do fundo do olho.
Para comparar o desempenho das metodologias desenvolvidas neste trabalho, foi realizado um
levantamento do estado da arte, onde foram considerados os métodos mais relevantes descritos na
literatura para cada um dos objetivos descritos anteriormente. Para facilitar a comparação entre
métodos, o estado da arte foi dividido em metodologias de processamento de imagem e baseadas
em aprendizagem máquina.
Optouse
no trabalho de investigação desenvolvido pela utilização de metodologias de análise espacial
de imagem em detrimento de metodologias baseadas em aprendizagem máquina. Em particular,
as metodologias baseadas no espaço de escalas mostraram ser efetivas na obtenção dos
objetivos estabelecidos.
Para a segmentação de exsudados foram usadas duas abordagens distintas. A primeira abordagem
baseiase
na curvatura em espaço de escalas em conjunto com a resposta máxima local de um detetor
de manchas em espaço de escalas e limiares dinâmicos. A segunda abordagem baseiase
na
análise do mapa de distribuição de ruído em conjunto com operadores morfológicos e limiares
adaptativos. Ambas as abordagens fazem uma segmentação dos exsudados de elevada precisão,
além de lidarem eficazmente com a iluminação nãouniforme
e a variação de contraste presente
nas imagens do fundo do olho. A localização do disco ótico foi conseguida com uma nova técnica
designada por campos de soma acumulativos, combinada com métodos de melhoramento da rede
vascular. O algoritmo revela ser fiável e eficiente, particularmente em imagens patológicas. A robustez
do método foi verificada pela sua avaliação em oito bases de dados. A deteção da linha central
dos vasos sanguíneos foi obtida através de um detetor de cantos modificado em conjunto com
filtros binários e limiares dinâmicos. A segmentação da rede vascular foi conseguida com um novo
método de melhoramento de vasos sanguíneos em espaço de escalas. Os métodos desenvolvidos mostraram ser eficazes na deteção da linha central dos vasos sanguíneos e na segmentação da rede
vascular. Finalmente, o método para a deteção de microaneurismas assenta num formalismo de
espaço de escalas na deteção e na rotulagem dos microaneurismas. Para a rotulagem foi utilizada
uma nova abordagem da vizinhança dos candidatos a microaneurismas. A deteção de microaneurismas
permitiu avaliar também a deteção da retinopatia diabética. O método para a deteção
de microaneurismas mostrou ser competitivo quando comparado com outros métodos, em particular
em imagens de alta resolução. A deteção da retinopatia diabética exibiu um desempenho
semelhante a outros métodos e a especialistas humanos.
Os trabalhos descritos nesta tese mostram ser possível desenvolver uma abordagem fiável e robusta
em espaço de escalas capaz de detetar diferentes estruturas anatómicas e sinais patológicos
da retina.
Além disso, os resultados obtidos mostram que apesar de a pesquisa mais recente concentrarse
em metodologias de aprendizagem máquina, as metodologias de análise espacial apresentam
resultados muito competitivos e tipicamente independentes do equipamento de aquisição das imagens.
As metodologias desenvolvidas nesta tese podem ser importantes na definição de novos
descritores e características, que podem melhorar significativamente o resultado de métodos automatizados
Retinal vessel segmentation using textons
Segmenting vessels from retinal images, like segmentation in many other medical image domains, is a challenging task, as there is no unified way that can be adopted to extract the vessels accurately. However, it is the most critical stage in automatic assessment of various forms of diseases (e.g. Glaucoma, Age-related macular degeneration, diabetic retinopathy and cardiovascular diseases etc.). Our research aims to investigate retinal image segmentation approaches based on textons as they provide a compact description of texture that can be learnt from a training set. This thesis presents a brief review of those diseases and also includes their current situations, future trends and techniques used for their automatic diagnosis in routine clinical applications. The importance of retinal vessel segmentation is
particularly emphasized in such applications. An extensive review of previous work on retinal vessel segmentation and salient texture analysis methods is presented. Five automatic retinal vessel segmentation methods are proposed in this thesis. The first method focuses on addressing the problem of removing pathological anomalies (Drusen, exudates) for retinal vessel segmentation, which have been identified by other researchers as a problem and a common source of error. The results show that the modified method shows some
improvement compared to a previously published method. The second novel supervised segmentation method employs textons. We propose a new filter bank (MR11) that includes bar detectors for vascular feature extraction and other kernels to detect edges and photometric variations in the image. The k-means clustering algorithm is adopted for texton generation based on the vessel and non-vessel elements which are identified by ground truth. The third improved supervised method is developed based on the second one, in which textons are generated by k-means clustering and texton maps representing vessels are derived by back projecting pixel clusters onto hand labelled ground truth. A further step is implemented to ensure that the best combinations of textons are represented in the map and subsequently used to identify vessels in the test set. The experimental results on two benchmark datasets show that our proposed method performs well compared to other published work and the results of human experts. A further test of our system on an independent set of optical fundus images verified its consistent performance. The statistical analysis on experimental results also reveals that it is possible to train unified textons for retinal vessel segmentation. In the fourth method a novel scheme using Gabor filter bank for vessel feature extraction is proposed. The ii method is inspired by the human visual system. Machine learning is used to optimize the
Gabor filter parameters. The experimental results demonstrate that our method significantly enhances the true positive rate while maintaining a level of specificity that is comparable with other approaches. Finally, we proposed a new unsupervised texton based retinal vessel
segmentation method using derivative of SIFT and multi-scale Gabor filers. The lack of sufficient quantities of hand labelled ground truth and the high level of variability in ground truth labels amongst experts provides the motivation for this approach. The evaluation results
reveal that our unsupervised segmentation method is comparable with the best other supervised methods and other best state of the art methods
Intraretinal Fluid Pattern Characterization in Optical Coherence Tomography Images
[Abstract] Optical Coherence Tomography (OCT) has become a relevant image modality in the ophthalmological clinical practice, as it offers a detailed representation of the eye fundus. This medical imaging modality is currently one of the main means of identification and characterization of intraretinal cystoid regions, a crucial task in the diagnosis of exudative macular disease or macular edema, among the main causes of blindness in developed countries. This work presents an exhaustive analysis of intensity and texture-based descriptors for its identification and classification, using a complete set of 510 texture features, three state-of-the-art feature selection strategies, and seven representative classifier strategies. The methodology validation and the analysis were performed using an image dataset of 83 OCT scans. From these images, 1609 samples were extracted from both cystoid and non-cystoid regions. The different tested configurations provided satisfactory results, reaching a mean cross-validation test accuracy of 92.69%. The most promising feature categories identified for the issue were the Gabor filters, the Histogram of Oriented Gradients (HOG), the Gray-Level Run-Length matrix (GLRL), and the Laws’ texture filters (LAWS), being consistently and considerably selected along all feature selector algorithms in the top positions of different relevance rankings.Xunta de Galicia; ED431C 2016-047Xunta de Galicia; ED481A-2019/196This work is supported by the Instituto de Salud Carlos III, Government of Spain and FEDER funds of the European Union through the DTS18/00136 research projects and by the Ministerio de Ciencia, Innovación y Universidades, Government of Spain through the DPI2015-69948-R and RTI2018-095894-B-I00 research projects. Also, this work has received financial support from the European Union (European Regional Development Fund—ERDF) and the Xunta de Galicia, Grupos de Referencia Competitiva, Ref. ED431C 2016-047 and the Xunta de Galicia predoctoral grant contract ref. ED481A-2019/196
Caracterización del Edema Macular Diabético mediante análisis automático de Tomografías de Coherencia Óptica
Programa Oficial de Doctorado en Computación. 5009V01[Abstract] Diabetic Macular Edema (DME) is one of the most important complications of
diabetes and a leading cause of preventable blindness in the developed countries.
Among the di erent image modalities, Optical Coherence Tomography (OCT) is
a non-invasive, cross-sectional and high-resolution imaging technique that is commonly
used for the analysis and interpretation of many retinal structures and ocular
disorders. In this way, the development of Computer-Aided Diagnosis (CAD) systems
has become relevant over the recent years, facilitating and simplifying the work
of the clinical specialists in many relevant diagnostic processes, replacing manual
procedures that are tedious and highly time-consuming.
This thesis proposes a complete methodology for the identi cation and characterization
of DMEs using OCT images. To do so, the system combines and exploits
di erent clinical knowledge with image processing and machine learning strategies.
This automatic system is able to identify and characterize the main retinal structures
and several pathological conditions that are associated with the DME disease, following
the clinical classi cation of reference in the ophthalmological eld. Despite
the complexity and heterogeneity of this relevant ocular pathology, the proposed
system achieved satisfactory results, proving to be robust enough to be used in the
daily clinical practice, helping the clinicians to produce a more accurate diagnosis
and indicate adequate treatments[Resumen] El Edema Macular Diabético (EMD) es una de las complicaciones más importantes
de la diabetes y una de las principales causas de ceguera prevenible en los países
desarrollados. Entre las diferentes modalidades de imagen, la Tomografía de Coherencia
Óptica (TCO) es una técnica de imagen no invasiva, transversal y de alta
resolución que se usa comúnmente para el análisis e interpretación de múltiples
estructuras retinianas y trastornos oculares. De esta manera, el desarrollo de los
sistemas de Diagnóstico Asistido por Ordenador (DAO) se ha vuelto relevante en
los últimos años, facilitando y simplificando el trabajo de los especialistas clínicos
en muchos procesos diagnósticos relevantes, reemplazando procedimientos manuales
que son tediosos y requieren mucho tiempo.
Esta tesis propone una metodología completa para la identificación y caracterización
de EMDs utilizando imágenes TCO. Para ello, el sistema desarrollado combina
y explota diferentes conocimientos clínicos con estrategias de procesamiento
de imágenes y aprendizaje automático. Este sistema automático es capaz de identificar y caracterizar las principales estructuras retinianas y diferentes afecciones
patológicas asociadas con el EMD, siguiendo la clasificación clínica de referencia
en el campo oftalmológico. A pesar de la complejidad de esta relevante patología
ocular, el sistema propuesto logró resultados satisfactorios, demostrando ser lo sufi
cientemente robusto como para ser usado en la práctica clínica diaria, ayudando a
los médicos a producir diagnósticos más precisos y tratamientos más adecuados.[Resumo] O Edema Macular Diabético ( EMD) é unha das complicacións máis importantes da diabetes e unha das principais causas de cegueira prevenible nos países desenvoltos. Entre as diferentes modalidades de imaxe, a Tomografía de Coherencia Óptica ( TCO) é unha técnica de imaxe non invasiva, transversal e de alta resolución que se usa comunmente para a análise e interpretación de múltiples estruturas retinianas e trastornos oculares. Desta maneira, o desenvolvemento dos sistemas de Diagnóstico Asistido por Computador ( DAO) volveuse relevante nos últimos anos, facilitando e simplificando o traballo dos especialistas clínicos en moitos procesos diagnósticos relevantes, substituíndo procedementos manuais que son tediosos e requiren moito tempo. Esta tese propón unha metodoloxía completa para a identificación e caracterización de EMDs utilizando imaxes TCO. Para iso, o sistema desenvolto combina e explota diferentes coñecementos clínicos con estratexias de procesamento de imaxes e aprendizaxe automático. Este sistema automático é capaz de identificar e caracterizar as principais estruturas retinianas e diferentes afeccións patolóxicas asociadas co EMD, seguindo a clasificación clínica de referencia no campo oftalmolóxico. A pesar da complexidade desta relevante patoloxía ocular, o sistema proposto logrou resultados satisfactorios, demostrando ser o sufi cientemente robusto como para ser usado na práctica clínica diaria, axudando aos médicos para producir diagnósticos máis precisos e tratamentos máis adecuados
Detection and characterisation of vessels in retinal images.
Doctor of Philosophy in Mathematics, Statistics & Computer Science. University of KwaZulu-Natal, Durban
2015.As retinopathies such as diabetic retinopathy (DR) and retinopathy of
prematurity (ROP) continue to be the major causes of blindness globally,
regular retinal examinations of patients can assist in the early detection of
the retinopathies. The manual detection of retinal vessels is a very tedious
and time consuming task as it requires about two hours to manually detect
vessels in each retinal image. Automatic vessel segmentation has been helpful
in achieving speed, improved diagnosis and progress monitoring of these
diseases but has been challenging due to complexities such as the varying
width of the retinal vessels from very large to very small, low contrast of
thin vessels with respect to background and noise due to nonhomogeneous
illumination in the retinal images. Although several supervised and unsupervised
segmentation methods have been proposed in the literature, the
segmentation of thinner vessels, connectivity loss of the vessels and time
complexity remain the major challenges. In order to address these problems,
this research work investigated di erent unsupervised segmentation
approaches to be used in the robust detection of large and thin retinal vessels
in a timely e cient manner.
Firstly, this thesis conducted a study on the use of di erent global thresholding
techniques combined with di erent pre-processing and post-processing
techniques. Two histogram-based global thresholding techniques namely,
Otsu and Isodata were able to detect large retinal vessels but fail to segment
the thin vessels because these thin vessels have very low contrast and
are di cult to distinguish from the background tissues using the histogram
of the retinal images. Two new multi-scale approaches of computing global
threshold based on inverse di erence moment and sum-entropy combined
with phase congruence are investigated to improve the detection of vessels.
One of the findings of this study is that the multi-scale approaches of computing
global threshold combined with phase congruence based techniques
improved on the detection of large vessels and some of the thin vessels. They,
however, failed to maintain the width of the detected vessels. The reduction
in the width of the detected large and thin vessels results in low sensitivity
rates while relatively good accuracy rates were maintained. Another study
on the use of fuzzy c-means and GLCM sum entropy combined on phase
congruence for vessel segmentation showed that fuzzy c-means combined
with phase congruence achieved a higher average accuracy rates of 0.9431
and 0.9346 but a longer running time of 27.1 seconds when compared with
the multi-scale based sum entropy thresholding combined with phase congruence
with the average accuracy rates of 0.9416 and 0.9318 with a running
time of 10.3 seconds. The longer running time of the fuzzy c-means over the
sum entropy thresholding is, however, attributed to the iterative nature of
fuzzy c-means. When compared with the literature, both methods achieved
considerable faster running time.
This thesis investigated two novel local adaptive thresholding techniques for
the segmentation of large and thin retinal vessels. The two novel local adaptive
thresholding techniques applied two di erent Haralick texture features
namely, local homogeneity and energy. Although these two texture features
have been applied for supervised image segmentation in the literature, their
novelty in this thesis lies in that they are applied using an unsupervised
image segmentation approach. Each of these local adaptive thresholding
techniques locally applies a multi-scale approach on each of the texture
information considering the pixel of interest in relationship with its spacial
neighbourhood to compute the local adaptive threshold. The localised
multi-scale approach of computing the thresholds handled the challenge of
the vessels' width variation. Experiments showed significant improvements
in the average accuracy and average sensitivity rates of these techniques
when compared with the previously discussed global thresholding methods
and state of the art. The two novel local adaptive thresholding techniques
achieved a higher reduction of false vessels around the border of the optic
disc when compared with some of the previous techniques in the literature.
These techniques also achieved a highly improved computational time of 1.9
to 3.9 seconds to segment the vessels in each retinal image when compared
with the state of the art. Hence, these two novel local adaptive thresholding
techniques are proposed for the segmentation of the vessels in the retinal
images.
This thesis further investigated the combination of di erence image and kmeans
clustering technique for the segmentation of large and thin vessels in
retinal images. The pre-processing phase computed a di erence image and
k-means clustering technique was used for the vessel detection. While investigating
this vessel segmentation method, this thesis established the need
for a difference image that preserves the vessel details of the retinal image.
Investigating the di erent low pass filters, median filter yielded the best
di erence image required by k-means clustering for the segmentation of the
retinal vessels. Experiments showed that the median filter based di erence
images combined with k-means clustering technique achieved higher average
accuracy and average sensitivity rates when compared with the previously
discussed global thresholding methods and the state of the art. The median
filter based di erence images combined with k-means clustering technique
(that is, DIMDF) also achieved a higher reduction of false vessels around
the border of the optic disc when compared with some previous techniques
in the literature. These methods also achieved a highly improved computational
time of 3.4 to 4 seconds when compared with the literature. Hence,
the median filter based di erence images combined with k-means clustering
technique are proposed for the segmentation of the vessels in retinal images.
The characterisation of the detected vessels using tortuosity measure was
also investigated in this research. Although several vessel tortuosity methods
have been discussed in the literature, there is still need for an improved
method that e ciently detects vessel tortuosity. The experimental study
conducted in this research showed that the detection of the stationary points
helps in detecting the change of direction and twists in the vessels. The
combination of the vessel twist frequency obtained using the stationary
points and distance metric for the computation of normalised and nonnormalised
tortuosity index (TI) measure was investigated. Experimental
results showed that the non-normalised TI measure had a stronger correlation
with the expert's ground truth when compared with the distance
metric and normalised TI measures. Hence, a non-normalised TI measure
that combines the vessel twist frequency based on the stationary points and
distance metric is proposed for the measurement of vessel tortuosity
Personality Identification from Social Media Using Deep Learning: A Review
Social media helps in sharing of ideas and information among people scattered around the world and thus helps in creating communities, groups, and virtual networks. Identification of personality is significant in many types of applications such as in detecting the mental state or character of a person, predicting job satisfaction, professional and personal relationship success, in recommendation systems. Personality is also an important factor to determine individual variation in thoughts, feelings, and conduct systems. According to the survey of Global social media research in 2018, approximately 3.196 billion social media users are in worldwide. The numbers are estimated to grow rapidly further with the use of mobile smart devices and advancement in technology. Support vector machine (SVM), Naive Bayes (NB), Multilayer perceptron neural network, and convolutional neural network (CNN) are some of the machine learning techniques used for personality identification in the literature review. This paper presents various studies conducted in identifying the personality of social media users with the help of machine learning approaches and the recent studies that targeted to predict the personality of online social media (OSM) users are reviewed
Modélisation statistique des structures anatomiques de la rétine à partir d'images de fond d'oeil
L’examen non-invasif du fond d’oeil permet d’identifier sur la rétine les signes de nombreuses pathologies oculaires qui développent de graves symptômes pour le patient pouvant entraîner la cécité. Le réseau vasculaire rétinien peut de surcroît présenter des signes précurseurs de pathologies cardiovasculaires et cérébro-vasculaires. La rétine, où apparaissent ces pathologies, est constituée de plusieurs structures anatomiques dont la variabilité est importante au
sein d’une population saine. Pour autant, les évaluations cliniques actuelles ne prennent pas en compte cette variabilité ce qui ne permet pas de détecter précocement ces pathologies. Ces évaluations se basent sur un ensemble restreint de mesures prélevées à partir de structures
dont la segmentation manuelle est réalisable par les experts. De plus, elles sont basées sur un seuillage empirique déterminé par les cliniciens et appliqué sur chacune des mesures afin d’établir un diagnostic. Ainsi, les évaluations cliniques actuelles sont affectées par la grande
variabilité des structures anatomiques de la rétine au sein de la population et elles n’évaluent pas les anomalies trop difficiles à mesurer manuellement. Dans ce contexte, il convient de proposer de nouvelles mesures cliniques qui tiennent compte de la variabilité normale à l’aide
d’une modélisation statistique des structures anatomiques de la rétine. Cette modélisation statistique permet de mieux comprendre et identifier ce qui est normal et comment l’anatomie et ses attributs varient au sein d’une population saine. Cela permet ainsi d’identifier la présence de pathologies à l’aide de nouvelles mesures cliniques construites en tenant compte de la variabilité des attributs de l’anatomie. La modélisation statistique des structures anatomiques de la rétine est cependant difficile étant donné les variations morphologiques et topologiques de ces structures. Les changements morphologiques et topologiques
du réseau vasculaire rétinien compliquent son analyse statistique ainsi que les outils de recalage, de segmentation et de représentation sémantique s’y appliquant.
Les questions de recherches adressées dans cette thèse sont la production d’outils capables d’analyser la variabilité des structures anatomiques de la rétine et l’élaboration de nouvelles mesures cliniques tenant compte de la variabilité normale de ces structures. Pour répondre à ces questions de recherche, trois objectifs de recherche sont formulés. ----------ABSTRACT: Non-invasive retinal fundus examination allows clinicians to identify signs of many ocular conditions that develop critical symptoms affecting the patient and even leading to blindness. In addition, the retinal vascular network may present early signs of cardiovascular and cerebrovascular diseases. The retina, where these pathologies appear, is composed of several
anatomical structures whose variability is considerable within a healthy population. Yet, current clinical evaluations do not take into account this variability, and this does not allow early detection of these pathologies. These evaluations are based on a limited set of measurements
taken from structures whose manual segmentation is achievable by the experts. In addition, they are based on empirical thresholding determined by the clinicians and applied to each of the measurements to establish a diagnosis. Thus, current clinical assessments are affected by the large variability of anatomical structures of the retina within a healthy population and do not evaluate abnormalities that are too difficult to measure manually. In
this context, it is advisable to propose new clinical measurements that take into account the normal variability using statistical modeling of the anatomical structures of the retina. Such a statistical modeling approach helps us to better understand and identify what is normal and how the anatomy and its attributes vary across a healthy population. This makes it possible to identify the presence of pathologies using new clinical measurements constructed
by taking into account the variability of the anatomy’s attributes. Statistical modeling of the anatomical structures of the retina is difficult, however, given the morphological and topological variations of these structures. Morphological and topological changes in the
retinal vascular network complicate its statistical analysis as well as the registration methods, segmentation and semantic representation applied to it. The research questions proposed in this thesis pertain to creating tools capable of analyzing the variability of the anatomical structures of the retina and proposing new clinical measures
that take into account the normal variability of those structures. To answer these research questions, three research objectives are formulated
Deep learning-based diagnostic system for malignant liver detection
Cancer is the second most common cause of death of human beings, whereas liver cancer is the fifth most
common cause of mortality. The prevention of deadly diseases in living beings requires timely, independent,
accurate, and robust detection of ailment by a computer-aided diagnostic (CAD) system. Executing such intelligent CAD requires some preliminary steps, including preprocessing, attribute analysis, and identification.
In recent studies, conventional techniques have been used to develop computer-aided diagnosis algorithms.
However, such traditional methods could immensely affect the structural properties of processed images with
inconsistent performance due to variable shape and size of region-of-interest. Moreover, the unavailability of sufficient datasets makes the performance of the proposed methods doubtful for commercial use.
To address these limitations, I propose novel methodologies in this dissertation. First, I modified a
generative adversarial network to perform deblurring and contrast adjustment on computed tomography
(CT) scans. Second, I designed a deep neural network with a novel loss function for fully automatic precise
segmentation of liver and lesions from CT scans. Third, I developed a multi-modal deep neural network
to integrate pathological data with imaging data to perform computer-aided diagnosis for malignant liver
detection.
The dissertation starts with background information that discusses the proposed study objectives and the workflow. Afterward, Chapter 2 reviews a general schematic for developing a computer-aided algorithm, including image acquisition techniques, preprocessing steps, feature extraction approaches, and machine learning-based prediction methods.
The first study proposed in Chapter 3 discusses blurred images and their possible effects on classification.
A novel multi-scale GAN network with residual image learning is proposed to deblur images. The second
method in Chapter 4 addresses the issue of low-contrast CT scan images. A multi-level GAN is utilized
to enhance images with well-contrast regions. Thus, the enhanced images improve the cancer diagnosis
performance. Chapter 5 proposes a deep neural network for the segmentation of liver and lesions from
abdominal CT scan images. A modified Unet with a novel loss function can precisely segment minute lesions.
Similarly, Chapter 6 introduces a multi-modal approach for liver cancer variants diagnosis. The pathological data are integrated with CT scan images to diagnose liver cancer variants.
In summary, this dissertation presents novel algorithms for preprocessing and disease detection. Furthermore,
the comparative analysis validates the effectiveness of proposed methods in computer-aided diagnosis