Approximate Parallel High Utility Itemset Mining

High utility itemset mining discovers itemsets whose utility is above a given threshold, where utilities measure the importance of itemsets. In high utility itemset mining, memory and time performance limitations cause scalability issues, when the dataset is very large. In this thesis, the problem is addressed by proposing a distributed parallel algorithm, PHUI-Miner, and a sampling strategy, which can be used either separately or simultaneously. PHUI-Miner parallelizes the state-of-the-art high utility itemset mining algorithm HUI-Miner. The sampling strategy investigates the required sample size of a dataset, in order to achieve a given accuracy. We also propose an approach combining sampling with PHUI-Miner, which provides better time performance. In our experiments, we show that PHUI-Miner has high performance and outperforms the state-of-the-art non-parallel algorithm. The sampling strategy achieves accuracies much higher than the guarantee. Extensive experiments are also conducted to compare the time performance of PHUI-Miner with and without sampling

Discovery of error-tolerant biclusters from noisy gene expression data

An important analysis performed on microarray gene-expression data is to discover biclusters, which denote groups of genes that are coherently expressed for a subset of conditions. Various biclustering algorithms have been proposed to find different types of biclusters from these real-valued gene-expression data sets. However, these algorithms suffer from several limitations such as inability to explicitly handle errors/noise in the data; difficulty in discovering small bicliusters due to their top-down approach; inability of some of the approaches to find overlapping biclusters, which is crucial as many genes participate in multiple biological processes. Association pattern mining also produce biclusters as their result and can naturally address some of these limitations. However, traditional association mining only finds exact biclusters, whic

Using and extending itemsets in data mining : query approximation, dense itemsets, and tiles

Frequent itemsets are one of the best known concepts in data mining, and there is active research in itemset mining algorithms. An itemset is frequent in a database if its items co-occur in sufficiently many records. This thesis addresses two questions related to frequent itemsets. The first question is raised by a method for approximating logical queries by an inclusion-exclusion sum truncated to the terms corresponding to the frequent itemsets: how good are the approximations thereby obtained? The answer is twofold: in theory, the worst-case bound for the algorithm is very large, and a construction is given that shows the bound to be tight; but in practice, the approximations tend to be much closer to the correct answer than in the worst case. While some other algorithms based on frequent itemsets yield even better approximations, they are not as widely applicable. The second question concerns extending the definition of frequent itemsets to relax the requirement of perfect co-occurrence: highly correlated items may form an interesting set, even if they never co-occur in a single record. The problem is to formalize this idea in a way that still admits efficient mining algorithms. Two different approaches are used. First, dense itemsets are defined in a manner similar to the usual frequent itemsets and can be found using a modification of the original itemset mining algorithm. Second, tiles are defined in a different way so as to form a model for the whole data, unlike frequent and dense itemsets. A heuristic algorithm based on spectral properties of the data is given and some of its properties are explored.Yksi tiedon louhinnan tunnetuimmista käsitteistä ovat kattavat joukot, ja niiden etsintäalgoritmeja tutkitaan aktiivisesti. Joukko on tietokannassa kattava, jos sen alkiot esiintyvät yhdessä riittävän monessa tietueessa. Väitöskirjassa käsitellään kahta kattaviin joukkoihin liittyvää kysymystä. Ensimmäinen liittyy algoritmiin, jolla arvioidaan loogisten kyselyjen tuloksia laskemalla inkluusio-ekskluusio-summa pelkästään kattavilla joukoilla; kysymys on, kuinka hyviä arvioita näin saadaan. Väitöskirjassa annetaan kaksi vastausta: Teoriassa algoritmin pahimman tapauksen raja on hyvin suuri, ja vastaesimerkillä osoitetaan, että raja on tiukka. Käytännössä arviot ovat paljon lähempänä oikeaa tulosta kuin teoreettinen raja antaa ymmärtää. Arvioita vertaillaan eräisiin muihin algoritmeihin, joiden tulokset ovat vielä parempia mutta jotka eivät ole yhtä yleisesti sovellettavissa. Toinen kysymys koskee kattavien joukkojen määritelmän yleistämistä siten, että täydellisen yhteisesiintymisen vaatimuksesta tingitään. Joukko korreloituneita alkioita voi olla kiinnostava, vaikka alkiot eivät koskaan esiintyisi kaikki samassa tietueessa. Ongelma on tämän ajatuksen muuttaminen sellaiseksi määritelmäksi, että tehokkaita louhinta-algoritmeja voidaan käyttää. Väitöskirjassa esitetään kaksi lähestymistapaa. Ensinnäkin tiheät kattavat joukot määritellään samanlaiseen tapaan kuin tavalliset kattavat joukot, ja ne voidaan löytää samantyyppisellä algoritmilla. Toiseksi määritellään laatat, jotka muodostavat koko datalle mallin, toisin kuin kattavat ja tiheät kattavat joukot. Laattojen etsimistä varten kuvataan datan spektraalisiin ominaisuuksiin perustuva heuristiikka, jonka eräitä ominaisuuksia tutkitaan.reviewe

Hybrid ASP-based Approach to Pattern Mining

Detecting small sets of relevant patterns from a given dataset is a central challenge in data mining. The relevance of a pattern is based on user-provided criteria; typically, all patterns that satisfy certain criteria are considered relevant. Rule-based languages like Answer Set Programming (ASP) seem well-suited for specifying such criteria in a form of constraints. Although progress has been made, on the one hand, on solving individual mining problems and, on the other hand, developing generic mining systems, the existing methods either focus on scalability or on generality. In this paper we make steps towards combining local (frequency, size, cost) and global (various condensed representations like maximal, closed, skyline) constraints in a generic and efficient way. We present a hybrid approach for itemset, sequence and graph mining which exploits dedicated highly optimized mining systems to detect frequent patterns and then filters the results using declarative ASP. To further demonstrate the generic nature of our hybrid framework we apply it to a problem of approximately tiling a database. Experiments on real-world datasets show the effectiveness of the proposed method and computational gains for itemset, sequence and graph mining, as well as approximate tiling. Under consideration in Theory and Practice of Logic Programming (TPLP).Comment: 29 pages, 7 figures, 5 table