Canonizing Graphs of Bounded Tree Width in Logspace

Graph canonization is the problem of computing a unique representative, a canon, from the isomorphism class of a given graph. This implies that two graphs are isomorphic exactly if their canons are equal. We show that graphs of bounded tree width can be canonized by logarithmic-space (logspace) algorithms. This implies that the isomorphism problem for graphs of bounded tree width can be decided in logspace. In the light of isomorphism for trees being hard for the complexity class logspace, this makes the ubiquitous class of graphs of bounded tree width one of the few classes of graphs for which the complexity of the isomorphism problem has been exactly determined.Comment: 26 page

Hitting forbidden minors: Approximation and Kernelization

We study a general class of problems called F-deletion problems. In an F-deletion problem, we are asked whether a subset of at most $k$ vertices can be deleted from a graph $G$ such that the resulting graph does not contain as a minor any graph from the family F of forbidden minors. We obtain a number of algorithmic results on the F-deletion problem when F contains a planar graph. We give (1) a linear vertex kernel on graphs excluding $t$-claw $K_{1,t}$, the star with $t$ leves, as an induced subgraph, where $t$ is a fixed integer. (2) an approximation algorithm achieving an approximation ratio of $O(\log^{3/2} OPT)$, where $OPT$ is the size of an optimal solution on general undirected graphs. Finally, we obtain polynomial kernels for the case when F contains graph $\theta_c$ as a minor for a fixed integer $c$. The graph $\theta_c$ consists of two vertices connected by $c$ parallel edges. Even though this may appear to be a very restricted class of problems it already encompasses well-studied problems such as {\sc Vertex Cover}, {\sc Feedback Vertex Set} and Diamond Hitting Set. The generic kernelization algorithm is based on a non-trivial application of protrusion techniques, previously used only for problems on topological graph classes

The structure of graphs not admitting a fixed immersion

We present an easy structure theorem for graphs which do not admit an immersion of the complete graph. The theorem motivates the definition of a variation of tree decompositions based on edge cuts instead of vertex cuts which we call tree-cut decompositions. We give a definition for the width of tree-cut decompositions, and using this definition along with the structure theorem for excluded clique immersions, we prove that every graph either has bounded tree-cut width or admits an immersion of a large wall

Isomorphism of graph classes related to the circular-ones property

We give a linear-time algorithm that checks for isomorphism between two 0-1 matrices that obey the circular-ones property. This algorithm leads to linear-time isomorphism algorithms for related graph classes, including Helly circular-arc graphs, \Gamma-circular-arc graphs, proper circular-arc graphs and convex-round graphs.Comment: 25 pages, 9 figure

Performance and scalability of indexed subgraph query processing methods

Graph data management systems have become very popular as graphs are the natural data model for many applications. One of the main problems addressed by these systems is subgraph query processing; i.e., given a query graph, return all graphs that contain the query. The naive method for processing such queries is to perform a subgraph isomorphism test against each graph in the dataset. This obviously does not scale, as subgraph isomorphism is NP-Complete. Thus, many indexing methods have been proposed to reduce the number of candidate graphs that have to underpass the subgraph isomorphism test. In this paper, we identify a set of key factors-parameters, that influence the performance of related methods: namely, the number of nodes per graph, the graph density, the number of distinct labels, the number of graphs in the dataset, and the query graph size. We then conduct comprehensive and systematic experiments that analyze the sensitivity of the various methods on the values of the key parameters. Our aims are twofold: first to derive conclusions about the algorithms’ relative performance, and, second, to stress-test all algorithms, deriving insights as to their scalability, and highlight how both performance and scalability depend on the above factors. We choose six wellestablished indexing methods, namely Grapes, CT-Index, GraphGrepSX, gIndex, Tree+∆, and gCode, as representative approaches of the overall design space, including the most recent and best performing methods. We report on their index construction time and index size, and on query processing performance in terms of time and false positive ratio. We employ both real and synthetic datasets. Specifi- cally, four real datasets of different characteristics are used: AIDS, PDBS, PCM, and PPI. In addition, we generate a large number of synthetic graph datasets, empowering us to systematically study the algorithms’ performance and scalability versus the aforementioned key parameters