Genetic Algorithm Approach for Solving the Machine-Job Assignment with Controllable Processing Times

This paper considers a genetic algorithm (GA) for a machine-job assignment with controllable processing times (MJACPT). Integer representation with standard genetic operators is used. In an objective function, a job assignment is obtained from genetic code and for this, fixed assignment processing times are calculated by solving a constrained nonlinear convex optimization problem. Additionally, the job assignment of each individual is improved by local search. Computational results are presented for the instances from literature and modified large-scale instances for the generalized assignment problem (GAP). It can be seen that the proposed GA approach reaches almost all optimal solutions, which are known in advance, except in one case. For large-scale instances, GA obtained reasonably good solutions in relatively short computational time

Study of Fine-Grained, Irregular Parallel Applications on a Many-Core Processor

This dissertation demonstrates the possibility of obtaining strong speedups for a variety of parallel applications versus the best serial and parallel implementations on commodity platforms. These results were obtained using the PRAM-inspired Explicit Multi-Threading (XMT) many-core computing platform, which is designed to efficiently support execution of both serial and parallel code and switching between the two. Biconnectivity: For finding the biconnected components of a graph, we demonstrate speedups of 9x to 33x on XMT relative to the best serial algorithm using a relatively modest silicon budget. Further evidence suggests that speedups of 21x to 48x are possible. For graph connectivity, we demonstrate that XMT outperforms two contemporary NVIDIA GPUs of similar or greater silicon area. Prior studies of parallel biconnectivity algorithms achieved at most a 4x speedup, but we could not find biconnectivity code for GPUs to compare biconnectivity against them. Triconnectivity: We present a parallel solution to the problem of determining the triconnected components of an undirected graph. We obtain significant speedups on XMT over the only published optimal (linear-time) serial implementation of a triconnected components algorithm running on a modern CPU. To our knowledge, no other parallel implementation of a triconnected components algorithm has been published for any platform. Burrows-Wheeler compression: We present novel work-optimal parallel algorithms for Burrows-Wheeler compression and decompression of strings over a constant alphabet and their empirical evaluation. To validate these theoretical algorithms, we implement them on XMT and show speedups of up to 25x for compression, and 13x for decompression, versus bzip2, the de facto standard implementation of Burrows-Wheeler compression. Fast Fourier transform (FFT): Using FFT as an example, we examine the impact that adoption of some enabling technologies, including silicon photonics, would have on the performance of a many-core architecture. The results show that a single-chip many-core processor could potentially outperform a large high-performance computing cluster. Boosted decision trees: This chapter focuses on the hybrid memory architecture of the XMT computer platform, a key part of which is a flexible all-to-all interconnection network that connects processors to shared memory modules. First, to understand some recent advances in GPU memory architecture and how they relate to this hybrid memory architecture, we use microbenchmarks including list ranking. Then, we contrast the scalability of applications with that of routines. In particular, regardless of the scalability needs of full applications, some routines may involve smaller problem sizes, and in particular smaller levels of parallelism, perhaps even serial. To see how a hybrid memory architecture can benefit such applications, we simulate a computer with such an architecture and demonstrate the potential for a speedup of 3.3X over NVIDIA's most powerful GPU to date for XGBoost, an implementation of boosted decision trees, a timely machine learning approach. Boolean satisfiability (SAT): SAT is an important performance-hungry problem with applications in many problem domains. However, most work on parallelizing SAT solvers has focused on coarse-grained, mostly embarrassing parallelism. Here, we study fine-grained parallelism that can speed up existing sequential SAT solvers. We show the potential for speedups of up to 382X across a variety of problem instances. We hope that these results will stimulate future research

Parameterized Approximation Algorithms for Bidirected Steiner Network Problems

The Directed Steiner Network (DSN) problem takes as input a directed edge-weighted graph $G=(V,E)$ and a set $\mathcal{D}\subseteq V\times V$ of $k$ demand pairs. The aim is to compute the cheapest network $N\subseteq G$ for which there is an $s\to t$ path for each $(s,t)\in\mathcal{D}$. It is known that this problem is notoriously hard as there is no $k^{1/4-o(1)}$-approximation algorithm under Gap-ETH, even when parametrizing the runtime by $k$ [Dinur & Manurangsi, ITCS 2018]. In light of this, we systematically study several special cases of DSN and determine their parameterized approximability for the parameter $k$. For the bi-DSN$_\text{Planar}$ problem, the aim is to compute a planar optimum solution $N\subseteq G$ in a bidirected graph $G$, i.e., for every edge $uv$ of $G$ the reverse edge $vu$ exists and has the same weight. This problem is a generalization of several well-studied special cases. Our main result is that this problem admits a parameterized approximation scheme (PAS) for $k$. We also prove that our result is tight in the sense that (a) the runtime of our PAS cannot be significantly improved, and (b) it is unlikely that a PAS exists for any generalization of bi-DSN$_\text{Planar}$, unless FPT=W[1]. One important special case of DSN is the Strongly Connected Steiner Subgraph (SCSS) problem, for which the solution network $N\subseteq G$ needs to strongly connect a given set of $k$ terminals. It has been observed before that for SCSS a parameterized $2$-approximation exists when parameterized by $k$ [Chitnis et al., IPEC 2013]. We give a tight inapproximability result by showing that for $k$ no parameterized $(2-\varepsilon)$-approximation algorithm exists under Gap-ETH. Additionally we show that when restricting the input of SCSS to bidirected graphs, the problem remains NP-hard but becomes FPT for $k$

Algorithms for Graph Connectivity and Cut Problems - Connectivity Augmentation, All-Pairs Minimum Cut, and Cut-Based Clustering

We address a collection of related connectivity and cut problems in simple graphs that reach from the augmentation of planar graphs to be k-regular and c-connected to new data structures representing minimum separating cuts and algorithms that smoothly maintain Gomory-Hu trees in evolving graphs, and finally to an analysis of the cut-based clustering approach of Flake et al. and its adaption to dynamic scenarios

Algorithms and complexity analyses for some combinational optimization problems

The main focus of this dissertation is on classical combinatorial optimization problems in two important areas: scheduling and network design. In the area of scheduling, the main interest is in problems in the master-slave model. In this model, each machine is either a master machine or a slave machine. Each job is associated with a preprocessing task, a slave task and a postprocessing task that must be executed in this order. Each slave task has a dedicated slave machine. All the preprocessing and postprocessing tasks share a single master machine or the same set of master machines. A job may also have an arbitrary release time before which the preprocessing task is not available to be processed. The main objective in this dissertation is to minimize the total completion time or the makespan. Both the complexity and algorithmic issues of these problems are considered. It is shown that the problem of minimizing the total completion time is strongly NP-hard even under severe constraints. Various efficient algorithms are designed to minimize the total completion time under various scenarios. In the area of network design, the survivable network design problems are studied first. The input for this problem is an undirected graph G = (V, E), a non-negative cost for each edge, and a nonnegative connectivity requirement ruv for every (unordered) pair of vertices &ruv. The goal is to find a minimum-cost subgraph in which each pair of vertices u,v is joined by at least ruv edge (vertex)-disjoint paths. A Polynomial Time Approximation Scheme (PTAS) is designed for the problem when the graph is Euclidean and the connectivity requirement of any point is at most 2. PTASs or Quasi-PTASs are also designed for 2-edge-connectivity problem and biconnectivity problem and their variations in unweighted or weighted planar graphs. Next, the problem of constructing geometric fault-tolerant spanners with low cost and bounded maximum degree is considered. The first result shows that there is a greedy algorithm which constructs fault-tolerant spanners having asymptotically optimal bounds for both the maximum degree and the total cost at the same time. Then an efficient algorithm is developed which finds fault-tolerant spanners with asymptotically optimal bound for the maximum degree and almost optimal bound for the total cost

Doctor of Philosophy

dissertationNetwork emulation has become an indispensable tool for the conduct of research in networking and distributed systems. It offers more realism than simulation and more control and repeatability than experimentation on a live network. However, emulation testbeds face a number of challenges, most prominently realism and scale. Because emulation allows the creation of arbitrary networks exhibiting a wide range of conditions, there is no guarantee that emulated topologies reflect real networks; the burden of selecting parameters to create a realistic environment is on the experimenter. While there are a number of techniques for measuring the end-to-end properties of real networks, directly importing such properties into an emulation has been a challenge. Similarly, while there exist numerous models for creating realistic network topologies, the lack of addresses on these generated topologies has been a barrier to using them in emulators. Once an experimenter obtains a suitable topology, that topology must be mapped onto the physical resources of the testbed so that it can be instantiated. A number of restrictions make this an interesting problem: testbeds typically have heterogeneous hardware, scarce resources which must be conserved, and bottlenecks that must not be overused. User requests for particular types of nodes or links must also be met. In light of these constraints, the network testbed mapping problem is NP-hard. Though the complexity of the problem increases rapidly with the size of the experimenter's topology and the size of the physical network, the runtime of the mapper must not; long mapping times can hinder the usability of the testbed. This dissertation makes three contributions towards improving realism and scale in emulation testbeds. First, it meets the need for realistic network conditions by creating Flexlab, a hybrid environment that couples an emulation testbed with a live-network testbed, inheriting strengths from each. Second, it attends to the need for realistic topologies by presenting a set of algorithms for automatically annotating generated topologies with realistic IP addresses. Third, it presents a mapper, assign, that is capable of assigning experimenters' requested topologies to testbeds' physical resources in a manner that scales well enough to handle large environments

GRASP/VND Optimization Algorithms for Hard Combinatorial Problems

Two hard combinatorial problems are addressed in this thesis. The first one is known as the ”Max CutClique”, a combinatorial problem introduced by P. Martins in 2012. Given a simple graph, the goal is to find a clique C such that the number of links shared between C and its complement C C is maximum. In a first contribution, a GRASP/VND methodology is proposed to tackle the problem. In a second one, the N P-Completeness of the problem is mathematically proved. Finally, a further generalization with weighted links is formally presented with a mathematical programming formulation, and the previous GRASP is adapted to the new problem. The second problem under study is a celebrated optimization problem coming from network reliability analysis. We assume a graph G with perfect nodes and imperfect links, that fail independently with identical probability ρ ∈ [0,1]. The reliability RG(ρ), is the probability that the resulting subgraph has some spanning tree. Given a number of nodes and links, p and q, the goal is to find the (p,q)-graph that has the maximum reliability RG(ρ), uniformly in the compact set ρ ∈ [0,1]. In a first contribution, we exploit properties shared by all uniformly most-reliable graphs such as maximum connectivity and maximum Kirchhoff number, in order to build a novel GRASP/VND methodology. Our proposal finds the globally optimum solution under small cases, and it returns novel candidates of uniformly most-reliable graphs, such as Kantor-Mobius and Heawood graphs. We also offer a literature review, ¨ and a mathematical proof that the bipartite graph K4,4 is uniformly most-reliable. Finally, an abstract mathematical model of Stochastic Binary Systems (SBS) is also studied. It is a further generalization of network reliability models, where failures are modelled by a general logical function. A geometrical approximation of a logical function is offered, as well as a novel method to find reliability bounds for general SBS. This bounding method combines an algebraic duality, Markov inequality and Hahn-Banach separation theorem between convex and compact sets