The Topology ToolKit

This system paper presents the Topology ToolKit (TTK), a software platform designed for topological data analysis in scientific visualization. TTK provides a unified, generic, efficient, and robust implementation of key algorithms for the topological analysis of scalar data, including: critical points, integral lines, persistence diagrams, persistence curves, merge trees, contour trees, Morse-Smale complexes, fiber surfaces, continuous scatterplots, Jacobi sets, Reeb spaces, and more. TTK is easily accessible to end users due to a tight integration with ParaView. It is also easily accessible to developers through a variety of bindings (Python, VTK/C++) for fast prototyping or through direct, dependence-free, C++, to ease integration into pre-existing complex systems. While developing TTK, we faced several algorithmic and software engineering challenges, which we document in this paper. In particular, we present an algorithm for the construction of a discrete gradient that complies to the critical points extracted in the piecewise-linear setting. This algorithm guarantees a combinatorial consistency across the topological abstractions supported by TTK, and importantly, a unified implementation of topological data simplification for multi-scale exploration and analysis. We also present a cached triangulation data structure, that supports time efficient and generic traversals, which self-adjusts its memory usage on demand for input simplicial meshes and which implicitly emulates a triangulation for regular grids with no memory overhead. Finally, we describe an original software architecture, which guarantees memory efficient and direct accesses to TTK features, while still allowing for researchers powerful and easy bindings and extensions. TTK is open source (BSD license) and its code, online documentation and video tutorials are available on TTK's website

The number of Reidemeister Moves Needed for Unknotting

There is a positive constant $c_1$ such that for any diagram $D$ representing the unknot, there is a sequence of at most $2^{c_1 n}$ Reidemeister moves that will convert it to a trivial knot diagram, $n$ is the number of crossings in $D$. A similar result holds for elementary moves on a polygonal knot $K$ embedded in the 1-skeleton of the interior of a compact, orientable, triangulated $PL$ 3-manifold $M$. There is a positive constant $c_2$ such that for each $t \geq 1$, if $M$ consists of $t$ tetrahedra, and $K$ is unknotted, then there is a sequence of at most $2^{c_2 t}$ elementary moves in $M$ which transforms $K$ to a triangle contained inside one tetrahedron of $M$. We obtain explicit values for $c_1$ and $c_2$.Comment: 48 pages, 14 figure

Computational topology with Regina: Algorithms, heuristics and implementations

Regina is a software package for studying 3-manifold triangulations and normal surfaces. It includes a graphical user interface and Python bindings, and also supports angle structures, census enumeration, combinatorial recognition of triangulations, and high-level functions such as 3-sphere recognition, unknot recognition and connected sum decomposition. This paper brings 3-manifold topologists up-to-date with Regina as it appears today, and documents for the first time in the literature some of the key algorithms, heuristics and implementations that are central to Regina's performance. These include the all-important simplification heuristics, key choices of data structures and algorithms to alleviate bottlenecks in normal surface enumeration, modern implementations of 3-sphere recognition and connected sum decomposition, and more. We also give some historical background for the project, including the key role played by Rubinstein in its genesis 15 years ago, and discuss current directions for future development.Comment: 29 pages, 10 figures; v2: minor revisions. To appear in "Geometry & Topology Down Under", Contemporary Mathematics, AM

Complexity of Seifert manifolds

In this thesis, we give an overview over the theory of Seifert fibre spaces and the complexity theory. We start by giving some preliminary notions about 2-dimensional orbifolds, fibre bundles and circle bundles, in order to be able to understand the following part of the thesis, regarding the theory of Seifert fibre spaces. We first see the definition and properties of Seifert fibre spaces and, after giving a combinatorial description, we classify them up to fibre-preserving homeomorphism and up to homeomorphism. Afterwards, we introduce the complexity theory, at first in a general way concerning all compact 3-manifolds and then focusing ourselves on the estimation for the complexity of Seifert fibre spaces. We also give some examples of spine constructions for manifolds with boundary having complexity zero

GENERAL FLIPS AND THE CD-INDEX

We generalize bistellar operations (often called flips) on simplicial manifolds to a notion of general flips on PL-spheres. We provide methods for computing the cd-index of these general flips, which is the change in the cd-index of any sphere to which the flip is applied. We provide formulas and relations among flips in certain classes, paying special attention to the classic case of bistellar flips. We also consider questions of flip-connecticity , that is, we show that any two polytopes in certain classes can be connected via a sequence of flips in an appropriate class

The topological correctness of PL approximations of isomanifolds

Isomanifolds are the generalization of isosurfaces to arbitrary dimension and codimension, i.e. manifolds defined as the zero set of some multivariate vector-valued smooth function f : Rd → Rd−n. A natural (and efficient) way to approximate an isomanifold is to consider its Piecewise-Linear (PL) approximation based on a triangulation T of the ambient space Rd. In this paper, we give conditions under which the PL-approximation of an isomanifold is topologically equivalent to the isomanifold. The conditions are easy to satisfy in the sense that they can always be met by taking a sufficiently fine triangulation T . This contrasts with previous results on the triangulation of manifolds where, in arbitrary dimensions, delicate perturbations are needed to guarantee topological correctness, which leads to strong limitations in practice. We further give a bound on the Fréchet distance between the original isomanifold and its PL-approximation. Finally we show analogous results for the PL-approximation of an isomanifold with boundary