On a clique covering problem of orlin

AbstractLet T2n be the complement of a perfect matching in the complete graph on 2n vertices, and cc(T2n) be the minimum number of complete subgraphs necessary to cover all the edges of T2n Orlin posed the problem of determining the asymptotic behaviour of cc(T2n). We show that cc(T2n)=min{k:n⩽(k−1⌈k2⌉)} for all n>1, (which implies that limn→∞cc(T 2n)/log2n=1). This is done by applying a Sperner-type theorem on set families due to Bollobás and Schönheim

On complexity of optimized crossover for binary representations

We consider the computational complexity of producing the best possible offspring in a crossover, given two solutions of the parents. The crossover operators are studied on the class of Boolean linear programming problems, where the Boolean vector of variables is used as the solution representation. By means of efficient reductions of the optimized gene transmitting crossover problems (OGTC) we show the polynomial solvability of the OGTC for the maximum weight set packing problem, the minimum weight set partition problem and for one of the versions of the simple plant location problem. We study a connection between the OGTC for linear Boolean programming problem and the maximum weight independent set problem on 2-colorable hypergraph and prove the NP-hardness of several special cases of the OGTC problem in Boolean linear programming.Comment: Dagstuhl Seminar 06061 "Theory of Evolutionary Algorithms", 200

Mod/Resc Parsimony Inference

We address in this paper a new computational biology problem that aims at understanding a mechanism that could potentially be used to genetically manipulate natural insect populations infected by inherited, intra-cellular parasitic bacteria. In this problem, that we denote by \textsc{Mod/Resc Parsimony Inference}, we are given a boolean matrix and the goal is to find two other boolean matrices with a minimum number of columns such that an appropriately defined operation on these matrices gives back the input. We show that this is formally equivalent to the \textsc{Bipartite Biclique Edge Cover} problem and derive some complexity results for our problem using this equivalence. We provide a new, fixed-parameter tractability approach for solving both that slightly improves upon a previously published algorithm for the \textsc{Bipartite Biclique Edge Cover}. Finally, we present experimental results where we applied some of our techniques to a real-life data set.Comment: 11 pages, 3 figure