528,864 research outputs found
Recurrence networks - A novel paradigm for nonlinear time series analysis
This paper presents a new approach for analysing structural properties of
time series from complex systems. Starting from the concept of recurrences in
phase space, the recurrence matrix of a time series is interpreted as the
adjacency matrix of an associated complex network which links different points
in time if the evolution of the considered states is very similar. A critical
comparison of these recurrence networks with similar existing techniques is
presented, revealing strong conceptual benefits of the new approach which can
be considered as a unifying framework for transforming time series into complex
networks that also includes other methods as special cases.
It is demonstrated that there are fundamental relationships between the
topological properties of recurrence networks and the statistical properties of
the phase space density of the underlying dynamical system. Hence, the network
description yields new quantitative characteristics of the dynamical complexity
of a time series, which substantially complement existing measures of
recurrence quantification analysis
Graph Theory and Networks in Biology
In this paper, we present a survey of the use of graph theoretical techniques
in Biology. In particular, we discuss recent work on identifying and modelling
the structure of bio-molecular networks, as well as the application of
centrality measures to interaction networks and research on the hierarchical
structure of such networks and network motifs. Work on the link between
structural network properties and dynamics is also described, with emphasis on
synchronization and disease propagation.Comment: 52 pages, 5 figures, Survey Pape
Multilayer Networks in a Nutshell
Complex systems are characterized by many interacting units that give rise to
emergent behavior. A particularly advantageous way to study these systems is
through the analysis of the networks that encode the interactions among the
system's constituents. During the last two decades, network science has
provided many insights in natural, social, biological and technological
systems. However, real systems are more often than not interconnected, with
many interdependencies that are not properly captured by single layer networks.
To account for this source of complexity, a more general framework, in which
different networks evolve or interact with each other, is needed. These are
known as multilayer networks. Here we provide an overview of the basic
methodology used to describe multilayer systems as well as of some
representative dynamical processes that take place on top of them. We round off
the review with a summary of several applications in diverse fields of science.Comment: 16 pages and 3 figures. Submitted for publicatio
Degeneracy: a link between evolvability, robustness and complexity in biological systems
A full accounting of biological robustness remains elusive; both in terms of the mechanisms by which robustness is achieved and the forces that have caused robustness to grow over evolutionary time. Although its importance to topics such as ecosystem services and resilience is well recognized, the broader relationship between robustness and evolution is only starting to be fully appreciated. A renewed interest in this relationship has been prompted by evidence that mutational robustness can play a positive role in the discovery of adaptive innovations (evolvability) and evidence of an intimate relationship between robustness and complexity in biology.
This paper offers a new perspective on the mechanics of evolution and the origins of complexity, robustness, and evolvability. Here we explore the hypothesis that degeneracy, a partial overlap in the functioning of multi-functional components, plays a central role in the evolution and robustness of complex forms. In support of this hypothesis, we present evidence that degeneracy is a fundamental source of robustness, it is intimately tied to multi-scaled complexity, and it establishes conditions that are necessary for system evolvability
Brain networks under attack : robustness properties and the impact of lesions
A growing number of studies approach the brain as a complex network, the so-called âconnectomeâ. Adopting this framework, we examine what types or extent of damage the brain can withstandâreferred to as network ârobustnessââand conversely, which kind of distortions can be expected after brain lesions. To this end, we review computational lesion studies and empirical studies investigating network alterations in brain tumour, stroke and traumatic brain injury patients. Common to these three types of focal injury is that there is no unequivocal relationship between the anatomical lesion site and its topological characteristics within the brain network. Furthermore, large-scale network effects of these focal lesions are compared to those of a widely studied multifocal neurodegenerative disorder, Alzheimerâs disease, in which central parts of the connectome are preferentially affected. Results indicate that human brain networks are remarkably resilient to different types of lesions, compared to other types of complex networks such as random or scale-free networks. However, lesion effects have been found to depend critically on the topological position of the lesion. In particular, damage to network hub regionsâand especially those connecting different subnetworksâwas found to cause the largest disturbances in network organization. Regardless of lesion location, evidence from empirical and computational lesion studies shows that lesions cause significant alterations in global network topology. The direction of these changes though remains to be elucidated. Encouragingly, both empirical and modelling studies have indicated that after focal damage, the connectome carries the potential to recover at least to some extent, with normalization of graph metrics being related to improved behavioural and cognitive functioning. To conclude, we highlight possible clinical implications of these findings, point out several methodological limitations that pertain to the study of brain diseases adopting a network approach, and provide suggestions for future research
Information geometric methods for complexity
Research on the use of information geometry (IG) in modern physics has
witnessed significant advances recently. In this review article, we report on
the utilization of IG methods to define measures of complexity in both
classical and, whenever available, quantum physical settings. A paradigmatic
example of a dramatic change in complexity is given by phase transitions (PTs).
Hence we review both global and local aspects of PTs described in terms of the
scalar curvature of the parameter manifold and the components of the metric
tensor, respectively. We also report on the behavior of geodesic paths on the
parameter manifold used to gain insight into the dynamics of PTs. Going
further, we survey measures of complexity arising in the geometric framework.
In particular, we quantify complexity of networks in terms of the Riemannian
volume of the parameter space of a statistical manifold associated with a given
network. We are also concerned with complexity measures that account for the
interactions of a given number of parts of a system that cannot be described in
terms of a smaller number of parts of the system. Finally, we investigate
complexity measures of entropic motion on curved statistical manifolds that
arise from a probabilistic description of physical systems in the presence of
limited information. The Kullback-Leibler divergence, the distance to an
exponential family and volumes of curved parameter manifolds, are examples of
essential IG notions exploited in our discussion of complexity. We conclude by
discussing strengths, limits, and possible future applications of IG methods to
the physics of complexity.Comment: review article, 60 pages, no figure
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