Hyperspectral Unmixing Overview: Geometrical, Statistical, and Sparse Regression-Based Approaches

Imaging spectrometers measure electromagnetic energy scattered in their instantaneous field view in hundreds or thousands of spectral channels with higher spectral resolution than multispectral cameras. Imaging spectrometers are therefore often referred to as hyperspectral cameras (HSCs). Higher spectral resolution enables material identification via spectroscopic analysis, which facilitates countless applications that require identifying materials in scenarios unsuitable for classical spectroscopic analysis. Due to low spatial resolution of HSCs, microscopic material mixing, and multiple scattering, spectra measured by HSCs are mixtures of spectra of materials in a scene. Thus, accurate estimation requires unmixing. Pixels are assumed to be mixtures of a few materials, called endmembers. Unmixing involves estimating all or some of: the number of endmembers, their spectral signatures, and their abundances at each pixel. Unmixing is a challenging, ill-posed inverse problem because of model inaccuracies, observation noise, environmental conditions, endmember variability, and data set size. Researchers have devised and investigated many models searching for robust, stable, tractable, and accurate unmixing algorithms. This paper presents an overview of unmixing methods from the time of Keshava and Mustard's unmixing tutorial [1] to the present. Mixing models are first discussed. Signal-subspace, geometrical, statistical, sparsity-based, and spatial-contextual unmixing algorithms are described. Mathematical problems and potential solutions are described. Algorithm characteristics are illustrated experimentally.Comment: This work has been accepted for publication in IEEE Journal of Selected Topics in Applied Earth Observations and Remote Sensin

Fuzzy spectral clustering methods for textual data

Nowadays, the development of advanced information technologies has determined an increase in the production of textual data. This inevitable growth accentuates the need to advance in the identification of new methods and tools able to efficiently analyse such kind of data. Against this background, unsupervised classification techniques can play a key role in this process since most of this data is not classified. Document clustering, which is used for identifying a partition of clusters in a corpus of documents, has proven to perform efficiently in the analyses of textual documents and it has been extensively applied in different fields, from topic modelling to information retrieval tasks. Recently, spectral clustering methods have gained success in the field of text classification. These methods have gained popularity due to their solid theoretical foundations which do not require any specific assumption on the global structure of the data. However, even though they prove to perform well in text classification problems, little has been done in the field of clustering. Moreover, depending on the type of documents analysed, it might be often the case that textual documents do not contain only information related to a single topic: indeed, there might be an overlap of contents characterizing different knowledge domains. Consequently, documents may contain information that is relevant to different areas of interest to some degree. The first part of this work critically analyses the main clustering algorithms used for text data, involving also the mathematical representation of documents and the pre-processing phase. Then, three novel fuzzy versions of spectral clustering algorithms for text data are introduced. The first one exploits the use of fuzzy K-medoids instead of K-means. The second one derives directly from the first one but is used in combination with Kernel and Set Similarity (KS2M), which takes into account the Jaccard index. Finally, in the third one, in order to enhance the clustering performance, a new similarity measure S∗ is proposed. This last one exploits the inherent sequential nature of text data by means of a weighted combination between the Spectrum string kernel function and a measure of set similarity. The second part of the thesis focuses on spectral bi-clustering algorithms for text mining tasks, which represent an interesting and partially unexplored field of research. In particular, two novel versions of fuzzy spectral bi-clustering algorithms are introduced. The two algorithms differ from each other for the approach followed in the identification of the document and the word partitions. Indeed, the first one follows a simultaneous approach while the second one a sequential approach. This difference leads also to a diversification in the choice of the number of clusters. The adequacy of all the proposed fuzzy (bi-)clustering methods is evaluated by experiments performed on both real and benchmark data sets

Dynamic segmentation techniques applied to load profiles of electric energy consumption from domestic users

[EN] The electricity sector is currently undergoing a process of liberalization and separation of roles, which is being implemented under the regulatory auspices of each Member State of the European Union and, therefore, with different speeds, perspectives and objectives that must converge on a common horizon, where Europe will benefit from an interconnected energy market in which producers and consumers can participate in free competition. This process of liberalization and separation of roles involves two consequences or, viewed another way, entails a major consequence from which other immediate consequence, as a necessity, is derived. The main consequence is the increased complexity in the management and supervision of a system, the electrical, increasingly interconnected and participatory, with connection of distributed energy sources, much of them from renewable sources, at different voltage levels and with different generation capacity at any point in the network. From this situation the other consequence is derived, which is the need to communicate information between agents, reliably, safely and quickly, and that this information is analyzed in the most effective way possible, to form part of the processes of decision taking that improve the observability and controllability of a system which is increasing in complexity and number of agents involved. With the evolution of Information and Communication Technologies (ICT), and the investments both in improving existing measurement and communications infrastructure, and taking the measurement and actuation capacity to a greater number of points in medium and low voltage networks, the availability of data that informs of the state of the network is increasingly higher and more complete. All these systems are part of the so-called Smart Grids, or intelligent networks of the future, a future which is not so far. One such source of information comes from the energy consumption of customers, measured on a regular basis (every hour, half hour or quarter-hour) and sent to the Distribution System Operators from the Smart Meters making use of Advanced Metering Infrastructure (AMI). This way, there is an increasingly amount of information on the energy consumption of customers, being stored in Big Data systems. This growing source of information demands specialized techniques which can take benefit from it, extracting a useful and summarized knowledge from it. This thesis deals with the use of this information of energy consumption from Smart Meters, in particular on the application of data mining techniques to obtain temporal patterns that characterize the users of electrical energy, grouping them according to these patterns in a small number of groups or clusters, that allow evaluating how users consume energy, both during the day and during a sequence of days, allowing to assess trends and predict future scenarios. For this, the current techniques are studied and, proving that the current works do not cover this objective, clustering or dynamic segmentation techniques applied to load profiles of electric energy consumption from domestic users are developed. These techniques are tested and validated on a database of hourly energy consumption values for a sample of residential customers in Spain during years 2008 and 2009. The results allow to observe both the characterization in consumption patterns of the different types of residential energy consumers, and their evolution over time, and to assess, for example, how the regulatory changes that occurred in Spain in the electricity sector during those years influenced in the temporal patterns of energy consumption.[ES] El sector eléctrico se halla actualmente sometido a un proceso de liberalización y separación de roles, que está siendo aplicado bajo los auspicios regulatorios de cada Estado Miembro de la Unión Europea y, por tanto, con distintas velocidades, perspectivas y objetivos que deben confluir en un horizonte común, en donde Europa se beneficiará de un mercado energético interconectado, en el cual productores y consumidores podrán participar en libre competencia. Este proceso de liberalización y separación de roles conlleva dos consecuencias o, visto de otra manera, conlleva una consecuencia principal de la cual se deriva, como necesidad, otra consecuencia inmediata. La consecuencia principal es el aumento de la complejidad en la gestión y supervisión de un sistema, el eléctrico, cada vez más interconectado y participativo, con conexión de fuentes distribuidas de energía, muchas de ellas de origen renovable, a distintos niveles de tensión y con distinta capacidad de generación, en cualquier punto de la red. De esta situación se deriva la otra consecuencia, que es la necesidad de comunicar información entre los distintos agentes, de forma fiable, segura y rápida, y que esta información sea analizada de la forma más eficaz posible, para que forme parte de los procesos de toma de decisiones que mejoran la observabilidad y controlabilidad de un sistema cada vez más complejo y con más agentes involucrados. Con el avance de las Tecnologías de Información y Comunicaciones (TIC), y las inversiones tanto en mejora de la infraestructura existente de medida y comunicaciones, como en llevar la obtención de medidas y la capacidad de actuación a un mayor número de puntos en redes de media y baja tensión, la disponibilidad de datos sobre el estado de la red es cada vez mayor y más completa. Todos estos sistemas forman parte de las llamadas Smart Grids, o redes inteligentes del futuro, un futuro ya no tan lejano. Una de estas fuentes de información proviene de los consumos energéticos de los clientes, medidos de forma periódica (cada hora, media hora o cuarto de hora) y enviados hacia las Distribuidoras desde los contadores inteligentes o Smart Meters, mediante infraestructura avanzada de medida o Advanced Metering Infrastructure (AMI). De esta forma, cada vez se tiene una mayor cantidad de información sobre los consumos energéticos de los clientes, almacenada en sistemas de Big Data. Esta cada vez mayor fuente de información demanda técnicas especializadas que sepan aprovecharla, extrayendo un conocimiento útil y resumido de la misma. La presente Tesis doctoral versa sobre el uso de esta información de consumos energéticos de los contadores inteligentes, en concreto sobre la aplicación de técnicas de minería de datos (data mining) para obtener patrones temporales que caractericen a los usuarios de energía eléctrica, agrupándolos según estos mismos patrones en un número reducido de grupos o clusters, que permiten evaluar la forma en que los usuarios consumen la energía, tanto a lo largo del día como durante una secuencia de días, permitiendo evaluar tendencias y predecir escenarios futuros. Para ello se estudian las técnicas actuales y, comprobando que los trabajos actuales no cubren este objetivo, se desarrollan técnicas de clustering o segmentación dinámica aplicadas a curvas de carga de consumo eléctrico diario de clientes domésticos. Estas técnicas se prueban y validan sobre una base de datos de consumos energéticos horarios de una muestra de clientes residenciales en España durante los años 2008 y 2009. Los resultados permiten observar tanto la caracterización en consumos de los distintos tipos de consumidores energéticos residenciales, como su evolución en el tiempo, y permiten evaluar, por ejemplo, cómo influenciaron en los patrones temporales de consumos los cambios regulatorios que se produjeron en España en el sector eléctrico durante esos años.[CA] El sector elèctric es troba actualment sotmès a un procés de liberalització i separació de rols, que s'està aplicant davall els auspicis reguladors de cada estat membre de la Unió Europea i, per tant, amb distintes velocitats, perspectives i objectius que han de confluir en un horitzó comú, on Europa es beneficiarà d'un mercat energètic interconnectat, en el qual productors i consumidors podran participar en lliure competència. Aquest procés de liberalització i separació de rols comporta dues conseqüències o, vist d'una altra manera, comporta una conseqüència principal de la qual es deriva, com a necessitat, una altra conseqüència immediata. La conseqüència principal és l'augment de la complexitat en la gestió i supervisió d'un sistema, l'elèctric, cada vegada més interconnectat i participatiu, amb connexió de fonts distribuïdes d'energia, moltes d'aquestes d'origen renovable, a distints nivells de tensió i amb distinta capacitat de generació, en qualsevol punt de la xarxa. D'aquesta situació es deriva l'altra conseqüència, que és la necessitat de comunicar informació entre els distints agents, de forma fiable, segura i ràpida, i que aquesta informació siga analitzada de la manera més eficaç possible, perquè forme part dels processos de presa de decisions que milloren l'observabilitat i controlabilitat d'un sistema cada vegada més complex i amb més agents involucrats. Amb l'avanç de les tecnologies de la informació i les comunicacions (TIC), i les inversions, tant en la millora de la infraestructura existent de mesura i comunicacions, com en el trasllat de l'obtenció de mesures i capacitat d'actuació a un nombre més gran de punts en xarxes de mitjana i baixa tensió, la disponibilitat de dades sobre l'estat de la xarxa és cada vegada major i més completa. Tots aquests sistemes formen part de les denominades Smart Grids o xarxes intel·ligents del futur, un futur ja no tan llunyà. Una d'aquestes fonts d'informació prové dels consums energètics dels clients, mesurats de forma periòdica (cada hora, mitja hora o quart d'hora) i enviats cap a les distribuïdores des dels comptadors intel·ligents o Smart Meters, per mitjà d'infraestructura avançada de mesura o Advanced Metering Infrastructure (AMI). D'aquesta manera, cada vegada es té una major quantitat d'informació sobre els consums energètics dels clients, emmagatzemada en sistemes de Big Data. Aquesta cada vegada major font d'informació demanda tècniques especialitzades que sàpiguen aprofitar-la, extraient-ne un coneixement útil i resumit. La present tesi doctoral versa sobre l'ús d'aquesta informació de consums energètics dels comptadors intel·ligents, en concret sobre l'aplicació de tècniques de mineria de dades (data mining) per a obtenir patrons temporals que caracteritzen els usuaris d'energia elèctrica, agrupant-los segons aquests mateixos patrons en una quantitat reduïda de grups o clusters, que permeten avaluar la forma en què els usuaris consumeixen l'energia, tant al llarg del dia com durant una seqüència de dies, i que permetent avaluar tendències i predir escenaris futurs. Amb aquesta finalitat, s'estudien les tècniques actuals i, en comprovar que els treballs actuals no cobreixen aquest objectiu, es desenvolupen tècniques de clustering o segmentació dinàmica aplicades a corbes de càrrega de consum elèctric diari de clients domèstics. Aquestes tècniques es proven i validen sobre una base de dades de consums energètics horaris d'una mostra de clients residencials a Espanya durant els anys 2008 i 2009. Els resultats permeten observar tant la caracterització en consums dels distints tipus de consumidors energètics residencials, com la seua evolució en el temps, i permeten avaluar, per exemple, com van influenciar en els patrons temporals de consums els canvis reguladors que es van produir a Espanya en el sector elèctric durant aquests anys.Benítez Sánchez, IJ. (2015). Dynamic segmentation techniques applied to load profiles of electric energy consumption from domestic users [Tesis doctoral no publicada]. Universitat Politècnica de València. https://doi.org/10.4995/Thesis/10251/59236TESI

The flare likelihood and region eruption forecasting (FLARECAST) project: flare forecasting in the big data & machine learning era

The European Union funded the FLARECAST project, that ran from January 2015 until February 2018. FLARECAST had a research-to-operations (R2O) focus, and accordingly introduced several innovations into the discipline of solar flare forecasting. FLARECAST innovations were: first, the treatment of hundreds of physical properties viewed as promising flare predictors on equal footing, extending multiple previous works; second, the use of fourteen (14) different machine learning techniques, also on equal footing, to optimize the immense Big Data parameter space created by these many predictors; third, the establishment of a robust, three-pronged communication effort oriented toward policy makers, space-weather stakeholders and the wider public. FLARECAST pledged to make all its data, codes and infrastructure openly available worldwide. The combined use of 170+ properties (a total of 209 predictors are now available) in multiple machine-learning algorithms, some of which were designed exclusively for the project, gave rise to changing sets of best-performing predictors for the forecasting of different flaring levels, at least for major flares. At the same time, FLARECAST reaffirmed the importance of rigorous training and testing practices to avoid overly optimistic pre-operational prediction performance. In addition, the project has (a) tested new and revisited physically intuitive flare predictors and (b) provided meaningful clues toward the transition from flares to eruptive flares, namely, events associated with coronal mass ejections (CMEs). These leads, along with the FLARECAST data, algorithms and infrastructure, could help facilitate integrated space-weather forecasting efforts that take steps to avoid effort duplication. In spite of being one of the most intensive and systematic flare forecasting efforts to-date, FLARECAST has not managed to convincingly lift the barrier of stochasticity in solar flare occurrence and forecasting: solar flare prediction thus remains inherently probabilistic

Machine learning in solar physics

The application of machine learning in solar physics has the potential to greatly enhance our understanding of the complex processes that take place in the atmosphere of the Sun. By using techniques such as deep learning, we are now in the position to analyze large amounts of data from solar observations and identify patterns and trends that may not have been apparent using traditional methods. This can help us improve our understanding of explosive events like solar flares, which can have a strong effect on the Earth environment. Predicting hazardous events on Earth becomes crucial for our technological society. Machine learning can also improve our understanding of the inner workings of the sun itself by allowing us to go deeper into the data and to propose more complex models to explain them. Additionally, the use of machine learning can help to automate the analysis of solar data, reducing the need for manual labor and increasing the efficiency of research in this field.Comment: 100 pages, 13 figures, 286 references, accepted for publication as a Living Review in Solar Physics (LRSP

Data-Driven Modeling For Decision Support Systems And Treatment Management In Personalized Healthcare

Massive amount of electronic medical records (EMRs) accumulating from patients and populations motivates clinicians and data scientists to collaborate for the advanced analytics to create knowledge that is essential to address the extensive personalized insights needed for patients, clinicians, providers, scientists, and health policy makers. Learning from large and complicated data is using extensively in marketing and commercial enterprises to generate personalized recommendations. Recently the medical research community focuses to take the benefits of big data analytic approaches and moves to personalized (precision) medicine. So, it is a significant period in healthcare and medicine for transferring to a new paradigm. There is a noticeable opportunity to implement a learning health care system and data-driven healthcare to make better medical decisions, better personalized predictions; and more precise discovering of risk factors and their interactions. In this research we focus on data-driven approaches for personalized medicine. We propose a research framework which emphasizes on three main phases: 1) Predictive modeling, 2) Patient subgroup analysis and 3) Treatment recommendation. Our goal is to develop novel methods for each phase and apply them in real-world applications. In the fist phase, we develop a new predictive approach based on feature representation using deep feature learning and word embedding techniques. Our method uses different deep architectures (Stacked autoencoders, Deep belief network and Variational autoencoders) for feature representation in higher-level abstractions to obtain effective and more robust features from EMRs, and then build prediction models on the top of them. Our approach is particularly useful when the unlabeled data is abundant whereas labeled one is scarce. We investigate the performance of representation learning through a supervised approach. We perform our method on different small and large datasets. Finally we provide a comparative study and show that our predictive approach leads to better results in comparison with others. In the second phase, we propose a novel patient subgroup detection method, called Supervised Biclustring (SUBIC) using convex optimization and apply our approach to detect patient subgroups and prioritize risk factors for hypertension (HTN) in a vulnerable demographic subgroup (African-American). Our approach not only finds patient subgroups with guidance of a clinically relevant target variable but also identifies and prioritizes risk factors by pursuing sparsity of the input variables and encouraging similarity among the input variables and between the input and target variables. Finally, in the third phase, we introduce a new survival analysis framework using deep learning and active learning with a novel sampling strategy. First, our approach provides better representation with lower dimensions from clinical features using labeled (time-to-event) and unlabeled (censored) instances and then actively trains the survival model by labeling the censored data using an oracle. As a clinical assistive tool, we propose a simple yet effective treatment recommendation approach based on our survival model. In the experimental study, we apply our approach on SEER-Medicare data related to prostate cancer among African-Americans and white patients. The results indicate that our approach outperforms significantly than baseline models

Advances in Statistical and Machine Learning Methods for Image Data, with Application to Alzheimer's Disease

The revolutionary development of neuroimage technology allows for the generation of large-scale neuroimage data in modern medical studies. For example, structural magnetic resonance imaging (sMRI) is widely used in segmenting neurodegenerative regions in the brain and positron-emission tomography (PET) is commonly used by clinicians and researchers to quantify the severity of Alzheimer's disease. In the first part of this dissertation, we build “OASIS-AD”, which is a supervised learning model based on a well-validated automated segmentation tool “OASIS” in multiple sclerosis (MS). OASIS-AD considers the specific challenges raised by WMH in Alzheimer's Disease (AD) to reduce false discoveries. We show that OASIS-AD performs better than several existing automated white matter hyperintensity segmentation approaches. In the second part of this dissertation, we develop an interpretable penalized multivariate high-dimensional method for image-on-scalar regression that can be used for association studies between high-dimensional PET images and patients' scalar measures. This method overcomes the lack of interpretability in regularized regression after reduced-rank decomposition through a novel encoder-decoder based penalty to regularize interpretable image characteristics. Empirical properties of the proposed approach are examined and compared to existing methods in simulation studies and in the analysis of PET images from subjects in a study of Alzheimer's Disease. In the third part of this dissertation, we developed ACU-Net, an efficient convolutional network for medical image segmentation. The proposed deep learning network overcomes the small sample size problem of training a deep neural network when used for medical image segmentation. It also decreases computation cost by increasing the effective degrees of freedom through data augmentation and the novel use of convolutional layers blocks to compress the model. We show that ACU-Net can achieve competitive performance while dramatically decreases the computation cost compared with modern CNNs. Public health significance: This dissertation proposes new statistical and machine learning methods for two aging-related problems: (1) automatically segmenting white matter hyperintensity (WMH), a biomarker of neurodegenerative pathology, and (2) estimating the association between neurodegeneration pathology and vascular measures, which are important to aging population living quality and can be studied by clinical neuroimage data

Pattern Recognition

Pattern recognition is a very wide research field. It involves factors as diverse as sensors, feature extraction, pattern classification, decision fusion, applications and others. The signals processed are commonly one, two or three dimensional, the processing is done in real- time or takes hours and days, some systems look for one narrow object class, others search huge databases for entries with at least a small amount of similarity. No single person can claim expertise across the whole field, which develops rapidly, updates its paradigms and comprehends several philosophical approaches. This book reflects this diversity by presenting a selection of recent developments within the area of pattern recognition and related fields. It covers theoretical advances in classification and feature extraction as well as application-oriented works. Authors of these 25 works present and advocate recent achievements of their research related to the field of pattern recognition

Spectral and spatial methods for the classification of urban remote sensing data

Lors de ces travaux, nous nous sommes intéressés au problème de la classification supervisée d'images satellitaires de zones urbaines. Les données traitées sont des images optiques à très hautes résolutions spatiales: données panchromatiques à très haute résolution spatiale (IKONOS, QUICKBIRD, simulations PLEIADES) et des images hyperspectrales (DAIS, ROSIS). Deux stratégies ont été proposées. La première stratégie consiste en une phase d'extraction de caractéristiques spatiales et spectrales suivie d'une phase de classification. Ces caractéristiques sont extraites par filtrages morphologiques : ouvertures et fermetures géodésiques et filtrages surfaciques auto-complémentaires. La classification est réalisée avec les machines à vecteurs supports (SVM) non linéaires. Nous proposons la définition d'un noyau spatio-spectral utilisant de manière conjointe l'information spatiale et l'information spectrale extraites lors de la première phase. La seconde stratégie consiste en une phase de fusion de données pre- ou post-classification. Lors de la fusion postclassification, divers classifieurs sont appliqués, éventuellement sur plusieurs données issues d'une même scène (image panchromat ique, image multi-spectrale). Pour chaque pixel, l'appartenance à chaque classe est estimée à l'aide des classifieurs. Un schéma de fusion adaptatif permettant d'utiliser l'information sur la fiabilité locale de chaque classifieur, mais aussi l'information globale disponible a priori sur les performances de chaque algorithme pour les différentes classes, est proposé. Les différents résultats sont fusionnés à l'aide d'opérateurs flous. Les méthodes ont été validées sur des images réelles. Des améliorations significatives sont obtenues par rapport aux méthodes publiées dans la litterature

Dynamic Analysis of High Dimensional Microarray Time Series Data Using Various Dimensional Reduction Methods

This dissertation focuses on dynamic analysis of reduced dimension models of two microarray time series datasets. Underlying research achieves two main objectives; namely, (1) various dimension reduction techniques used on time series microarray data, and (2) estimating autoregressive coefficients using several penalized regression methods like ridge, SCAD, and lasso.The research methodology includes two research tasks. Firstly, applying several dimension reduction methods on two microarray data sets, and modeling comparisons based on accuracy and computation cost. Secondly, applying the sparse vector autoregressive (SVAR) model to estimate gene regulatory network based on gene expression profile from time series microarray experiment on two datasets and the autoregressive coefficients estimation were calculated using several penalized regression methods, and then performing comparisons among various regression methods for each dimension reduction model.Study results show that the dimension reduction methods producing orthogonal independent variables are performing better because orthogonality leads to reasonable coefficient estimation with low standard errors. On the other hand, regarding dynamic analysis, it could be seen that factor analysis (FA) outperformed the rest of dimension reduction methods with regards to goodness of fit after applying several penalized regression methods on each model. The reason behind this is due to using varimax rotation in FA, in which most of the coordinates are set closer to zero, and in turn makes the data sparser. Hence inducing additional sparsity subject to maintaining a certain goodness of fit.Industrial Engineering & Managemen