Probabilistic regular graphs

Deterministic graph grammars generate regular graphs, that form a structural extension of configuration graphs of pushdown systems. In this paper, we study a probabilistic extension of regular graphs obtained by labelling the terminal arcs of the graph grammars by probabilities. Stochastic properties of these graphs are expressed using PCTL, a probabilistic extension of computation tree logic. We present here an algorithm to perform approximate verification of PCTL formulae. Moreover, we prove that the exact model-checking problem for PCTL on probabilistic regular graphs is undecidable, unless restricting to qualitative properties. Our results generalise those of EKM06, on probabilistic pushdown automata, using similar methods combined with graph grammars techniques.Comment: In Proceedings INFINITY 2010, arXiv:1010.611

Computation in Finitary Stochastic and Quantum Processes

We introduce stochastic and quantum finite-state transducers as computation-theoretic models of classical stochastic and quantum finitary processes. Formal process languages, representing the distribution over a process's behaviors, are recognized and generated by suitable specializations. We characterize and compare deterministic and nondeterministic versions, summarizing their relative computational power in a hierarchy of finitary process languages. Quantum finite-state transducers and generators are a first step toward a computation-theoretic analysis of individual, repeatedly measured quantum dynamical systems. They are explored via several physical systems, including an iterated beam splitter, an atom in a magnetic field, and atoms in an ion trap--a special case of which implements the Deutsch quantum algorithm. We show that these systems' behaviors, and so their information processing capacity, depends sensitively on the measurement protocol.Comment: 25 pages, 16 figures, 1 table; http://cse.ucdavis.edu/~cmg; numerous corrections and update

A Definition Scheme for Quantitative Bisimulation

FuTS, state-to-function transition systems are generalizations of labeled transition systems and of familiar notions of quantitative semantical models as continuous-time Markov chains, interactive Markov chains, and Markov automata. A general scheme for the definition of a notion of strong bisimulation associated with a FuTS is proposed. It is shown that this notion of bisimulation for a FuTS coincides with the coalgebraic notion of behavioral equivalence associated to the functor on Set given by the type of the FuTS. For a series of concrete quantitative semantical models the notion of bisimulation as reported in the literature is proven to coincide with the notion of quantitative bisimulation obtained from the scheme. The comparison includes models with orthogonal behaviour, like interactive Markov chains, and with multiple levels of behavior, like Markov automata. As a consequence of the general result relating FuTS bisimulation and behavioral equivalence we obtain, in a systematic way, a coalgebraic underpinning of all quantitative bisimulations discussed.Comment: In Proceedings QAPL 2015, arXiv:1509.0816

Ambiguity, Weakness, and Regularity in Probabilistic B\"uchi Automata

Probabilistic B\"uchi automata are a natural generalization of PFA to infinite words, but have been studied in-depth only rather recently and many interesting questions are still open. PBA are known to accept, in general, a class of languages that goes beyond the regular languages. In this work we extend the known classes of restricted PBA which are still regular, strongly relying on notions concerning ambiguity in classical omega-automata. Furthermore, we investigate the expressivity of the not yet considered but natural class of weak PBA, and we also show that the regularity problem for weak PBA is undecidable

Timed Comparisons of Semi-Markov Processes

Semi-Markov processes are Markovian processes in which the firing time of the transitions is modelled by probabilistic distributions over positive reals interpreted as the probability of firing a transition at a certain moment in time. In this paper we consider the trace-based semantics of semi-Markov processes, and investigate the question of how to compare two semi-Markov processes with respect to their time-dependent behaviour. To this end, we introduce the relation of being "faster than" between processes and study its algorithmic complexity. Through a connection to probabilistic automata we obtain hardness results showing in particular that this relation is undecidable. However, we present an additive approximation algorithm for a time-bounded variant of the faster-than problem over semi-Markov processes with slow residence-time functions, and a coNP algorithm for the exact faster-than problem over unambiguous semi-Markov processes

COMPUTER SIMULATION AND COMPUTABILITY OF BIOLOGICAL SYSTEMS

The ability to simulate a biological organism by employing a computer is related to the ability of the computer to calculate the behavior of such a dynamical system, or the "computability" of the system.* However, the two questions of computability and simulation are not equivalent. Since the question of computability can be given a precise answer in terms of recursive functions, automata theory and dynamical systems, it will be appropriate to consider it first. The more elusive question of adequate simulation of biological systems by a computer will be then addressed and a possible connection between the two answers given will be considered. A conjecture is formulated that suggests the possibility of employing an algebraic-topological, "quantum" computer (Baianu, 1971b) for analogous and symbolic simulations of biological systems that may include chaotic processes that are not, in genral, either recursively or digitally computable. Depending on the biological network being modelled, such as the Human Genome/Cell Interactome or a trillion-cell Cognitive Neural Network system, the appropriate logical structure for such simulations might be either the Quantum MV-Logic (QMV) discussed in recent publications (Chiara, 2004, and references cited therein)or Lukasiewicz Logic Algebras that were shown to be isomorphic to MV-logic algebras (Georgescu et al, 2001)