Factoring out ordered sections to expose thread-level parallelism

With the rise of multi-core processors, researchers are taking a new look at extending the applicability auto-parallelization techniques. In this paper, we identify a dependence pattern on which autoparallelization currently fails. This dependence pattern occurs for ordered sections, i.e. code fragments in a loop that must be executed atomically and in original program order. We discuss why these ordered sections prohibit current auto-parallelizers from working and we present a technique to deal with them. We experimentally demonstrate the efficacy of the technique, yielding significant overall program speedups

Bit-level pipelined digit-serial array processors

A new architecture for high performance digit-serial vector inner product (VIP) which can be pipelined to the bit-level is introduced. The design of the digit-serial vector inner product is based on a new systematic design methodology using radix-2n arithmetic. The proposed architecture allows a high level of bit-level pipelining to increase the throughput rate with minimum initial delay and minimum area. This will give designers greater flexibility in finding the best tradeoff between hardware cost and throughput rate. It is shown that sub-digit pipelined digit-serial structure can achieve a higher throughput rate with much less area consumption than an equivalent bit-parallel structure. A twin-pipe architecture to double the throughput rate of digit-serial multipliers and consequently that of the digit-serial vector inner product is also presented. The effect of the number of pipelining levels and the twin-pipe architecture on the throughput rate and hardware cost are discussed. A two's complement digit-serial architecture which can operate on both negative and positive numbers is also presented

Chippe : a system for constraint driven behavioral synthesis

This report describes the Chippe system, gives some background previous work and describes several sample design runs of the system. Also presented are the sources of the design tradeoffs used by Chippe, and overview of the internal design model, and experiences using the system

Execution models for mapping programs onto distributed memory parallel computers

The problem of exploiting the parallelism available in a program to efficiently employ the resources of the target machine is addressed. The problem is discussed in the context of building a mapping compiler for a distributed memory parallel machine. The paper describes using execution models to drive the process of mapping a program in the most efficient way onto a particular machine. Through analysis of the execution models for several mapping techniques for one class of programs, we show that the selection of the best technique for a particular program instance can make a significant difference in performance. On the other hand, the results of benchmarks from an implementation of a mapping compiler show that our execution models are accurate enough to select the best mapping technique for a given program

Parallelization of dynamic programming recurrences in computational biology

The rapid growth of biosequence databases over the last decade has led to a performance bottleneck in the applications analyzing them. In particular, over the last five years DNA sequencing capacity of next-generation sequencers has been doubling every six months as costs have plummeted. The data produced by these sequencers is overwhelming traditional compute systems. We believe that in the future compute performance, not sequencing, will become the bottleneck in advancing genome science. In this work, we investigate novel computing platforms to accelerate dynamic programming algorithms, which are popular in bioinformatics workloads. We study algorithm-specific hardware architectures that exploit fine-grained parallelism in dynamic programming kernels using field-programmable gate arrays: FPGAs). We advocate a high-level synthesis approach, using the recurrence equation abstraction to represent dynamic programming and polyhedral analysis to exploit parallelism. We suggest a novel technique within the polyhedral model to optimize for throughput by pipelining independent computations on an array. This design technique improves on the state of the art, which builds latency-optimal arrays. We also suggest a method to dynamically switch between a family of designs using FPGA reconfiguration to achieve a significant performance boost. We have used polyhedral methods to parallelize the Nussinov RNA folding algorithm to build a family of accelerators that can trade resources for parallelism and are between 15-130x faster than a modern dual core CPU implementation. A Zuker RNA folding accelerator we built on a single workstation with four Xilinx Virtex 4 FPGAs outperforms 198 3 GHz Intel Core 2 Duo processors. Furthermore, our design running on a single FPGA is an order of magnitude faster than competing implementations on similar-generation FPGAs and graphics processors. Our work is a step toward the goal of automated synthesis of hardware accelerators for dynamic programming algorithms

A High-Frequency Load-Store Queue with Speculative Allocations for High-Level Synthesis

Dynamically scheduled high-level synthesis (HLS) enables the use of load-store queues (LSQs) which can disambiguate data hazards at circuit runtime, increasing throughput in codes with unpredictable memory accesses. However, the increased throughput comes at the price of lower clock frequency and higher resource usage compared to statically scheduled circuits without LSQs. The lower frequency often nullifies any throughput improvements over static scheduling, while the resource usage becomes prohibitively expensive with large queue sizes. This paper presents a method for achieving dynamically scheduled memory operations in HLS without significant clock period and resource usage increase. We present a novel LSQ based on shift-registers enabled by the opportunity to specialize queue sizes to a target code in HLS. We show a method to speculatively allocate addresses to our LSQ, significantly increasing pipeline parallelism in codes that could not benefit from an LSQ before. In stark contrast to traditional load value speculation, we do not require pipeline replays and have no overhead on misspeculation. On a set of benchmarks with data hazards, our approach achieves an average speedup of 11$\times$ against static HLS and 5$\times$ against dynamic HLS that uses a state of the art LSQ from previous work. Our LSQ also uses several times fewer resources, scaling to queues with hundreds of entries, and supports both on-chip and off-chip memory.Comment: To appear in the International Conference on Field Programmable Technology (FPT'23), Yokohama, Japan, 11-14 December 202

The Potential of Synergistic Static, Dynamic and Speculative Loop Nest Optimizations for Automatic Parallelization

Research in automatic parallelization of loop-centric programs started with static analysis, then broadened its arsenal to include dynamic inspection-execution and speculative execution, the best results involving hybrid static-dynamic schemes. Beyond the detection of parallelism in a sequential program, scalable parallelization on many-core processors involves hard and interesting parallelism adaptation and mapping challenges. These challenges include tailoring data locality to the memory hierarchy, structuring independent tasks hierarchically to exploit multiple levels of parallelism, tuning the synchronization grain, balancing the execution load, decoupling the execution into thread-level pipelines, and leveraging heterogeneous hardware with specialized accelerators. The polyhedral framework allows to model, construct and apply very complex loop nest transformations addressing most of the parallelism adaptation and mapping challenges. But apart from hardware-specific, back-end oriented transformations (if-conversion, trace scheduling, value prediction), loop nest optimization has essentially ignored dynamic and speculative techniques. Research in polyhedral compilation recently reached a significant milestone towards the support of dynamic, data-dependent control flow. This opens a large avenue for blending dynamic analyses and speculative techniques with advanced loop nest optimizations. Selecting real-world examples from SPEC benchmarks and numerical kernels, we make a case for the design of synergistic static, dynamic and speculative loop transformation techniques. We also sketch the embedding of dynamic information, including speculative assumptions, in the heart of affine transformation search spaces

Selective Vectorization for Short-Vector Instructions

Multimedia extensions are nearly ubiquitous in today's general-purpose processors. These extensions consist primarily of a set of short-vector instructions that apply the same opcode to a vector of operands. Vector instructions introduce a data-parallel component to processors that exploit instruction-level parallelism, and present an opportunity for increased performance. In fact, ignoring a processor's vector opcodes can leave a significant portion of the available resources unused. In order for software developers to find short-vector instructions generally useful, however, the compiler must target these extensions with complete transparency and consistent performance. This paper describes selective vectorization, a technique for balancing computation across a processor's scalar and vector units. Current approaches for targeting short-vector instructions directly adopt vectorizing technology first developed for supercomputers. Traditional vectorization, however, can lead to a performance degradation since it fails to account for a processor's scalar resources. We formulate selective vectorization in the context of software pipelining. Our approach creates software pipelines with shorter initiation intervals, and therefore, higher performance. A key aspect of selective vectorization is its ability to manage transfer of operands between vector and scalar instructions. Even when operand transfer is expensive, our technique is sufficiently sophisticated to achieve significant performance gains. We evaluate selective vectorization on a set of SPEC FP benchmarks. On a realistic VLIW processor model, the approach achieves whole-program speedups of up to 1.35x over existing approaches. For individual loops, it provides speedups of up to 1.75x

Exploiting the Parallelism Exposed by Partial Evaluation

We describe an approach to parallel compilation that seeks to harness the vast amount of fine-grain parallelism that is exposed through partial evaluation of numerically-intensive scientific programs. We have constructed a compiler for the Supercomputer Toolkit parallel processor that uses partial evaluation to break down data abstractions and program structure, producing huge basic blocks that contain large amounts of fine-grain parallelism. We show that this fine-grain prarllelism can be effectively utilized even on coarse-grain parallel architectures by selectively grouping operations together so as to adjust the parallelism grain-size to match the inter-processor communication capabilities of the target architecture