Post-Processing of Discovered Association Rules Using Ontologies

In Data Mining, the usefulness of association rules is strongly limited by the huge amount of delivered rules. In this paper we propose a new approach to prune and filter discovered rules. Using Domain Ontologies, we strengthen the integration of user knowledge in the post-processing task. Furthermore, an interactive and iterative framework is designed to assist the user along the analyzing task. On the one hand, we represent user domain knowledge using a Domain Ontology over database. On the other hand, a novel technique is suggested to prune and to filter discovered rules. The proposed framework was applied successfully over the client database provided by Nantes Habitat

A subgraph isomorphism algorithm and its application to biochemical data

BackgroundGraphs can represent biological networks at the molecular, protein, or species level. An important query is to find all matches of a pattern graph to a target graph. Accomplishing this is inherently difficult (NP-complete) and the efficiency of heuristic algorithms for the problem may depend upon the input graphs. The common aim of existing algorithms is to eliminate unsuccessful mappings as early as and as inexpensively as possible.ResultsWe propose a new subgraph isomorphism algorithm which applies a search strategy to significantly reduce the search space without using any complex pruning rules or domain reduction procedures. We compare our method with the most recent and efficient subgraph isomorphism algorithms (VFlib, LAD, and our C++ implementation of FocusSearch which was originally distributed in Modula2) on synthetic, molecules, and interaction networks data. We show a significant reduction in the running time of our approach compared with these other excellent methods and show that our algorithm scales well as memory demands increase.ConclusionsSubgraph isomorphism algorithms are intensively used by biochemical tools. Our analysis gives a comprehensive comparison of different software approaches to subgraph isomorphism highlighting their weaknesses and strengths. This will help researchers make a rational choice among methods depending on their application. We also distribute an open-source package including our system and our own C++ implementation of FocusSearch together with all the used datasets (http://ferrolab.dmi.unict.it/ri.html). In future work, our findings may be extended to approximate subgraph isomorphism algorithms

Exact sampling and optimisation in statistical machine translation

In Statistical Machine Translation (SMT), inference needs to be performed over a high-complexity discrete distribution de ned by the intersection between a translation hypergraph and a target language model. This distribution is too complex to be represented exactly and one typically resorts to approximation techniques either to perform optimisation { the task of searching for the optimum translation { or sampling { the task of nding a subset of translations that is statistically representative of the goal distribution. Beam-search is an example of an approximate optimisation technique, where maximisation is performed over a heuristically pruned representation of the goal distribution. For inference tasks other than optimisation, rather than nding a single optimum, one is really interested in obtaining a set of probabilistic samples from the distribution. This is the case in training where one wishes to obtain unbiased estimates of expectations in order to t the parameters of a model. Samples are also necessary in consensus decoding where one chooses from a sample of likely translations the one that minimises a loss function. Due to the additional computational challenges posed by sampling, n-best lists, a by-product of optimisation, are typically used as a biased approximation to true probabilistic samples. A more direct procedure is to attempt to directly draw samples from the underlying distribution rather than rely on n-best list approximations. Markov Chain Monte Carlo (MCMC) methods, such as Gibbs sampling, o er a way to overcome the tractability issues in sampling, however their convergence properties are hard to assess. That is, it is di cult to know when, if ever, an MCMC sampler is producing samples that are compatible iii with the goal distribution. Rejection sampling, a Monte Carlo (MC) method, is more fundamental and natural, it o ers strong guarantees, such as unbiased samples, but is typically hard to design for distributions of the kind addressed in SMT, rendering an intractable method. A recent technique that stresses a uni ed view between the two types of inference tasks discussed here | optimisation and sampling | is the OS approach. OS can be seen as a cross between Adaptive Rejection Sampling (an MC method) and A optimisation. In this view the intractable goal distribution is upperbounded by a simpler (thus tractable) proxy distribution, which is then incrementally re ned to be closer to the goal until the maximum is found, or until the sampling performance exceeds a certain level. This thesis introduces an approach to exact optimisation and exact sampling in SMT by addressing the tractability issues associated with the intersection between the translation hypergraph and the language model. The two forms of inference are handled in a uni ed framework based on the OS approach. In short, an intractable goal distribution, over which one wishes to perform inference, is upperbounded by tractable proposal distributions. A proposal represents a relaxed version of the complete space of weighted translation derivations, where relaxation happens with respect to the incorporation of the language model. These proposals give an optimistic view on the true model and allow for easier and faster search using standard dynamic programming techniques. In the OS approach, such proposals are used to perform a form of adaptive rejection sampling. In rejection sampling, samples are drawn from a proposal distribution and accepted or rejected as a function of the mismatch between the proposal and the goal. The technique is adaptive in that rejected samples are used to motivate a re nement of the upperbound proposal that brings it closer to the goal, improving the rate of acceptance. Optimisation can be connected to an extreme form of sampling, thus the framework introduced here suits both exact optimisation and exact iv sampling. Exact optimisation means that the global maximum is found with a certi cate of optimality. Exact sampling means that unbiased samples are independently drawn from the goal distribution. We show that by using this approach exact inference is feasible using only a fraction of the time and space that would be required by a full intersection, without recourse to pruning techniques that only provide approximate solutions. We also show that the vast majority of the entries (n-grams) in a language model can be summarised by shorter and optimistic entries. This means that the computational complexity of our approach is less sensitive to the order of the language model distribution than a full intersection would be. Particularly in the case of sampling, we show that it is possible to draw exact samples compatible with distributions which incorporate a high-order language model component from proxy distributions that are much simpler. In this thesis, exact inference is performed in the context of both hierarchical and phrase-based models of translation, the latter characterising a problem that is NP-complete in nature.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Grasp: Randomised Semiring Parsing

We present a suite of algorithms for inference tasks over (finite and infinite) context-free sets. For generality and clarity, we have chosen the framework of semiring parsing with support to the most common semirings (e.g. Forest, Viterbi, k-best and Inside). We see parsing from the more general viewpoint of weighted deduction allowing for arbitrary weighted finite-state input and provide implementations of both bottom-up (CKY-inspired) and top-down (Earley-inspired) algorithms. We focus on approximate inference by Monte Carlo methods and provide implementations of ancestral sampling and slice sampling. In principle, sampling methods can deal with models whose independence assumptions are weaker than what is feasible by standard dynamic programming. We envision applications such as monolingual constituency parsing, synchronous parsing, context-free models of reordering for machine translation, and machine translation decoding

A Formal Model of Ambiguity and its Applications in Machine Translation

Systems that process natural language must cope with and resolve ambiguity. In this dissertation, a model of language processing is advocated in which multiple inputs and multiple analyses of inputs are considered concurrently and a single analysis is only a last resort. Compared to conventional models, this approach can be understood as replacing single-element inputs and outputs with weighted sets of inputs and outputs. Although processing components must deal with sets (rather than individual elements), constraints are imposed on the elements of these sets, and the representations from existing models may be reused. However, to deal efficiently with large (or infinite) sets, compact representations of sets that share structure between elements, such as weighted finite-state transducers and synchronous context-free grammars, are necessary. These representations and algorithms for manipulating them are discussed in depth in depth. To establish the effectiveness and tractability of the proposed processing model, it is applied to several problems in machine translation. Starting with spoken language translation, it is shown that translating a set of transcription hypotheses yields better translations compared to a baseline in which a single (1-best) transcription hypothesis is selected and then translated, independent of the translation model formalism used. More subtle forms of ambiguity that arise even in text-only translation (such as decisions conventionally made during system development about how to preprocess text) are then discussed, and it is shown that the ambiguity-preserving paradigm can be employed in these cases as well, again leading to improved translation quality. A model for supervised learning that learns from training data where sets (rather than single elements) of correct labels are provided for each training instance and use it to learn a model of compound word segmentation is also introduced, which is used as a preprocessing step in machine translation

A Tutorial on Clique Problems in Communications and Signal Processing

Since its first use by Euler on the problem of the seven bridges of K\"onigsberg, graph theory has shown excellent abilities in solving and unveiling the properties of multiple discrete optimization problems. The study of the structure of some integer programs reveals equivalence with graph theory problems making a large body of the literature readily available for solving and characterizing the complexity of these problems. This tutorial presents a framework for utilizing a particular graph theory problem, known as the clique problem, for solving communications and signal processing problems. In particular, the paper aims to illustrate the structural properties of integer programs that can be formulated as clique problems through multiple examples in communications and signal processing. To that end, the first part of the tutorial provides various optimal and heuristic solutions for the maximum clique, maximum weight clique, and $k$-clique problems. The tutorial, further, illustrates the use of the clique formulation through numerous contemporary examples in communications and signal processing, mainly in maximum access for non-orthogonal multiple access networks, throughput maximization using index and instantly decodable network coding, collision-free radio frequency identification networks, and resource allocation in cloud-radio access networks. Finally, the tutorial sheds light on the recent advances of such applications, and provides technical insights on ways of dealing with mixed discrete-continuous optimization problems

Visualizing and Interacting with Concept Hierarchies

Concept Hierarchies and Formal Concept Analysis are theoretically well grounded and largely experimented methods. They rely on line diagrams called Galois lattices for visualizing and analysing object-attribute sets. Galois lattices are visually seducing and conceptually rich for experts. However they present important drawbacks due to their concept oriented overall structure: analysing what they show is difficult for non experts, navigation is cumbersome, interaction is poor, and scalability is a deep bottleneck for visual interpretation even for experts. In this paper we introduce semantic probes as a means to overcome many of these problems and extend usability and application possibilities of traditional FCA visualization methods. Semantic probes are visual user centred objects which extract and organize reduced Galois sub-hierarchies. They are simpler, clearer, and they provide a better navigation support through a rich set of interaction possibilities. Since probe driven sub-hierarchies are limited to users focus, scalability is under control and interpretation is facilitated. After some successful experiments, several applications are being developed with the remaining problem of finding a compromise between simplicity and conceptual expressivity